Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 6.6e-252 873.6 463 100.0
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 7.7e-200 700.7 459 77.3
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 8.0e-197 690.6 463 77.3
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 3.0e-196 688.7 470 73.8
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 4.0e-196 688.3 470 77.4
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 8.8e-196 687.2 476 75.4
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 2.8e-194 682.2 470 74.0
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 2.4e-193 679.1 459 75.6
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 3.5e-192 675.2 462 74.2
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 4.5e-192 674.9 460 75.9
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 1.7e-191 672.9 434 77.6
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 2.2e-191 672.5 434 76.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 2.2e-191 672.5 460 73.9
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 3.8e-191 671.8 460 77.0
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 8.5e-191 670.6 432 76.4
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.5e-190 669.8 459 74.1
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 1.9e-190 669.5 442 75.8
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.9e-190 669.5 459 74.1
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 2.5e-190 669.1 459 74.1
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 5.5e-190 667.9 462 75.1
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 1.6e-189 666.4 459 73.9
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.6e-189 666.4 459 73.9
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 3.6e-189 665.2 468 77.1
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.0e-188 663.7 462 74.7
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.8e-188 662.9 462 72.1
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 2.3e-188 662.5 502 69.3
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 4.0e-188 661.8 466 73.8
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 6.8e-188 661.0 463 73.9
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 6.8e-188 661.0 464 72.8
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 6.8e-188 661.0 462 75.5
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 2.6e-187 659.1 434 77.4
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.4e-187 658.7 461 73.1
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 4.4e-187 658.3 463 73.7
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 4.4e-187 658.3 460 73.0
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 4.4e-187 658.3 460 73.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 5.7e-187 657.9 447 77.0
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 7.5e-187 657.5 483 73.3
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 9.8e-187 657.1 446 74.2
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.7e-186 656.4 476 72.3
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 2.8e-186 655.6 461 74.2
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 4.8e-186 654.8 472 72.0
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 6.3e-186 654.4 465 72.5
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 6.3e-186 654.4 456 72.4
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 8.3e-186 654.1 469 75.5
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.8e-185 652.9 444 74.8
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 5.4e-185 651.4 439 72.2
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 5.4e-185 651.4 444 73.9
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 1.6e-184 649.8 482 69.9
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 3.5e-184 648.7 460 72.0
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 3.5e-184 648.7 462 73.8
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 5.9e-184 647.9 431 74.2
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 7.7e-184 647.5 439 71.8
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 1.0e-183 647.1 442 75.1
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 1.3e-183 646.7 459 71.7
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 2.9e-183 645.6 477 70.9
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.1e-182 643.7 486 70.2
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 1.1e-182 643.7 458 74.5
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 4.7e-181 638.3 445 73.3
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 3.0e-180 635.6 448 72.8
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 5.2e-180 634.8 470 71.3
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 1.2e-179 633.6 451 75.2
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 1.5e-179 633.3 444 73.0
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 1.5e-179 633.3 499 69.7
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 5.7e-179 631.3 588 61.4
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 1.7e-178 629.8 467 69.4
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 5.4e-177 624.8 461 70.7
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 4.5e-176 621.7 494 66.8
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 6.6e-175 617.8 483 68.5
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 8.6e-175 617.5 486 66.9
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 8.6e-175 617.5 469 67.4
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 4.3e-174 615.1 450 71.1
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 7.3e-174 614.4 469 70.6
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 9.5e-174 614.0 485 68.7
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.6e-173 613.2 464 69.2
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 2.1e-173 612.8 484 68.0
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 4.7e-173 611.7 482 70.3
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 4.7e-173 611.7 486 66.7
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 6.1e-173 611.3 480 70.4
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.0e-172 610.5 485 67.6
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 8.9e-172 607.4 480 70.2
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 2.0e-171 606.3 367 80.9
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 2.6e-171 605.9 439 68.3
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 1.3e-170 603.6 544 60.7
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 2.7e-168 595.9 510 66.1
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 4.6e-168 595.1 491 66.2
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.8e-165 585.9 418 72.5
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 1.8e-164 583.2 439 68.3
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 9.2e-161 570.9 538 59.7
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.3e-159 567.0 477 60.8
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.1e-158 563.9 459 65.6
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 1.1e-158 563.9 532 60.5
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 2.5e-158 562.8 432 65.0
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 2.8e-157 559.3 449 65.0
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 1.1e-156 557.4 502 61.0
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 5.2e-156 555.1 467 64.0
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 9.8e-155 550.8 371 74.9
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 3.5e-152 542.3 431 62.9
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 9.5e-150 534.3 374 71.4
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 3.1e-148 529.3 474 61.4
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 2.6e-147 526.2 360 75.3
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 3.4e-147 525.8 466 58.6
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 9.9e-147 524.2 474 61.0
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 1.9e-145 520.0 307 81.4
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 2.4e-140 503.1 435 61.1
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 4.0e-140 502.3 458 59.0
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 2.0e-139 500.0 310 77.7
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 4.4e-139 498.8 428 60.7
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 7.6e-139 498.0 364 67.3
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 9.9e-139 497.7 385 64.2
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 9.9e-139 497.7 472 57.4
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.3e-138 497.3 310 78.7
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 3.0e-135 486.1 388 62.6
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 8.7e-135 484.6 459 56.0
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.1e-134 484.2 310 74.8
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 1.1e-134 484.2 310 74.8
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 9.6e-134 481.1 358 66.8
Medtr6g091930 Medicago truncatula HOM05D003169 ORTHO05D003700 1.6e-133 480.3 385 62.3
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 2.5e-126 456.4 356 64.0
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 7.4e-118 428.3 310 66.8
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 7.6e-115 418.3 272 77.6
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 1.3e-114 417.5 353 63.2
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 4.3e-110 402.5 249 78.3
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.2e-101 373.6 292 69.2
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.8e-100 370.5 259 74.5
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.5e-83 313.2 326 61.0
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 1.3e-74 284.6 297 50.8
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 6.1e-72 275.8 175 76.6
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 5.2e-63 246.1 187 68.4
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 7.8e-59 232.3 459 36.2
Cpa.g.sc32.155 Carica papaya HOM05D003169 ORTHO05D003700 1.1e-57 228.4 125 88.0
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.3e-57 226.5 165 66.7
MD07G1097900 Malus domestica HOM05D003169 ORTHO05D003700 4.3e-57 226.5 152 74.3
TPR.G3613 Trifolium pratense HOM05D003169 ORTHO05D003700 3.0e-55 220.3 175 64.6
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 4.9e-53 213.0 293 43.3
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.8e-52 211.1 357 36.7
SEGI_39235 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 9.2e-52 208.8 142 72.5
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 4.6e-51 206.5 290 41.4
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 8.0e-48 195.7 358 38.3
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 3.1e-47 193.7 311 39.2
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.2e-46 191.8 344 37.5
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 6.0e-43 179.5 355 35.2
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 1.2e-40 171.8 165 55.8
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 2.9e-37 160.6 147 61.9
Thhalv10000387m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 3.7e-37 160.2 89 82.0
SGA_v2.0_scaffold4G01863 Striga asiatica HOM05D003169 ORTHO05D003700 7.1e-36 156.0 117 68.4
VMungo1127G0791 Vigna mungo HOM05D003169 ORTHO05D003700 2.0e-30 137.9 131 69.5
arahy.Tifrunner.gnm1.ann1.2P0S20 Arachis hypogaea HOM05D003169 ORTHO05D003700 4.6e-27 126.7 78 75.6
Hund12039 Selenicereus undatus HOM05D003169 ORTHO05D003700 1.1e-25 122.1 120 51.7
TPR.G373 Trifolium pratense HOM05D003169 ORTHO05D003700 1.5e-25 121.7 121 52.9
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 1.6e-24 118.2 157 45.2
Actinidia33341 Actinidia chinensis HOM05D003169 ORTHO05D003700 7.8e-19 99.4 137 48.9
Actinidia33342 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.0e-18 99.0 50 96.0
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.1e-15 87.4 55 74.5
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 7.6e-14 82.8 48 83.3
QL04p095737 Quercus lobata HOM05D003169 ORTHO05D003700 2.4e-12 77.8 139 37.4
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 2.1e-11 74.7 109 38.5
Os04g0610200 Oryza sativa ssp. japonica HOM05D034463 ORTHO05D036998 5.1e-10 70.1 108 39.8
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.9e-09 68.2 33 87.9
Cre02.g095052 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.8e-08 64.3 63 52.4
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 9.0e-07 59.3 29 82.8


User provided reference genes

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