Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A897T24 Lonicera japonica HOM05D004347 ORTHO05D005270 1.6e-35 152.1 73 100.0
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 1.4e-31 139.0 72 94.4
CSS0015335 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 2.4e-31 138.3 72 93.1
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 3.1e-31 137.9 72 91.7
Aa31LG4G5540 Aethionema arabicum HOM05D004347 ORTHO05D005270 5.3e-31 137.1 71 90.1
BolC2t09280H Brassica oleracea HOM05D004347 ORTHO05D005270 5.3e-31 137.1 71 90.1
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 5.3e-31 137.1 72 90.3
Lj2A915G14 Lonicera japonica HOM05D004347 ORTHO05D005270 5.3e-31 137.1 69 94.2
TWI56G0865 Tripterygium wilfordii HOM05D004347 ORTHO05D005270 5.3e-31 137.1 72 90.3
DCAR_022470 Daucus carota HOM05D004347 ORTHO05D005270 7.0e-31 136.7 72 91.7
Lalb_Chr14g0369401 Lupinus albus HOM05D004347 ORTHO05D005270 7.0e-31 136.7 72 88.9
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 7.0e-31 136.7 72 88.9
CSS0031902 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 9.1e-31 136.3 72 91.7
CSS0033638 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 9.1e-31 136.3 72 91.7
Manes.05G157200 Manihot esculenta HOM05D004347 ORTHO05D005270 9.1e-31 136.3 72 90.3
Actinidia29814 Actinidia chinensis HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 90.3
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 88.9
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 88.9
Nitab4.5_0001091g0050 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 88.9
Potri.005G229400 Populus trichocarpa HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 88.9
Thecc.08G030400 Theobroma cacao HOM05D004347 ORTHO05D005270 1.2e-30 136.0 72 88.9
Ah.08g222650 Amaranthus hybridus HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 87.5
AUR62002295 Chenopodium quinoa HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 87.5
AUR62015395 Chenopodium quinoa HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 87.5
Lalb_Chr24g0398901 Lupinus albus HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 87.5
Rhsim07G0240900 Rhododendron simsii HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 90.3
RhsimUnG0052000 Rhododendron simsii HOM05D004347 ORTHO05D005270 2.0e-30 135.2 72 90.3
BcaC03g15560 Brassica carinata HOM05D004347 ORTHO05D005270 2.7e-30 134.8 71 88.7
C02p32480 Brassica napus HOM05D004347 ORTHO05D005270 2.7e-30 134.8 71 88.7
Nitab4.5_0004802g0040 Nicotiana tabacum HOM05D004347 ORTHO05D005270 2.7e-30 134.8 72 87.5
Peaxi162Scf00064g00534 Petunia axillaris HOM05D004347 ORTHO05D005270 2.7e-30 134.8 72 87.5
CDE02G4169 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 87.5
CDE06G1278 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 87.5
FAN15G0129 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 88.9
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 88.9
Gorai.009G200700 Gossypium raimondii HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 87.5
PSO210G5717 Papaver somniferum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 88.9
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 88.9
Hund03153 Selenicereus undatus HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 87.5
Sc15g0007070 Simmondsia chinensis HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 87.5
Solyc04g080610.3 Solanum lycopersicum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 86.1
Sopen04g034200 Solanum pennellii HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 86.1
PGSC0003DMG400003741 Solanum tuberosum HOM05D004347 ORTHO05D005270 3.5e-30 134.4 72 86.1
MD15G1024200 Malus domestica HOM05D004347 ORTHO05D005270 4.5e-30 134.0 72 87.5
Prupe.1G376500 Prunus persica HOM05D004347 ORTHO05D005270 4.5e-30 134.0 72 87.5
TAR628G1165 Trochodendron aralioides HOM05D004347 ORTHO05D005270 4.5e-30 134.0 72 88.9
EL10Ac3g05924 Beta vulgaris HOM05D004347 ORTHO05D005270 5.9e-30 133.7 71 88.7
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 5.9e-30 133.7 72 88.9
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
Duzib093G0814 Durio zibethinus HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
Os02g0704800 Oryza sativa ssp. japonica HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
Sp5g30470 Schrenkiella parvula HOM05D004347 ORTHO05D005270 7.7e-30 133.3 71 88.7
TAR376G0652 Trochodendron aralioides HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
VMungo1309G0178 Vigna mungo HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 84.7
Zm00001eb188330 Zea mays HOM05D004347 ORTHO05D005270 7.7e-30 133.3 72 87.5
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 87.5
CAN.G847.3 Capsicum annuum HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 87.5
Gohir.A05G192600 Gossypium hirsutum HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
Hma1.2p1_0203F.1_g086150 Hydrangea macrophylla HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 88.9
PGR031G1892 Punica granatum HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 87.5
Solyc12g089210.2 Solanum lycopersicum HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
Sopen12g031090 Solanum pennellii HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
THA.LOC104811378 Tarenaya hassleriana HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 87.5
unitig_8.g4581 Utricularia gibba HOM05D004347 ORTHO05D005270 1.0e-29 132.9 72 86.1
Ciclev10001509m.g Citrus clementina HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 84.7
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 87.5
Nitab4.5_0008031g0060 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 84.7
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 87.5
SMO298G0050 Selaginella moellendorffii HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 88.9
PGSC0003DMG400015463 Solanum tuberosum HOM05D004347 ORTHO05D005270 1.3e-29 132.5 72 86.1
BcaB05g24901 Brassica carinata HOM05D004347 ORTHO05D005270 1.7e-29 132.1 71 87.3
PSO063G7652 Papaver somniferum HOM05D004347 ORTHO05D005270 1.7e-29 132.1 72 87.5
Phvul.009G059600 Phaseolus vulgaris HOM05D004347 ORTHO05D005270 1.7e-29 132.1 72 84.7
Atru.chr13.439 Acer truncatum HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 83.3
MELO3C003814.2 Cucumis melo HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 86.1
CsaV3_3G045350 Cucumis sativus L. HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 86.1
FvH4_2g39540 Fragaria vesca HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 86.1
Lsat_1_v5_gn_6_14781 Lactuca sativa HOM05D004347 ORTHO05D005270 2.2e-29 131.7 71 88.7
MBI18_g10579_MAGBIO Magnolia biondii HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 84.7
RcHm_v2.0_Chr6g0301371 Rosa chinensis HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 86.1
Sed0020994 Sechium edule HOM05D004347 ORTHO05D005270 2.2e-29 131.7 72 86.1
AL2G35250 Arabidopsis lyrata HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
AT1G75330 Arabidopsis thaliana HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
BcaB02g07020 Brassica carinata HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
BcaC08g45584 Brassica carinata HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
A07p28900 Brassica napus HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
C06p32680 Brassica napus HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
BolC6t38392H Brassica oleracea HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
CARHR068670 Cardamine hirsuta HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
Ca_15501_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 2.9e-29 131.3 72 86.1
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 2.9e-29 131.3 72 87.5
Thhalv10018722m.g Eutrema salsugineum HOM05D004347 ORTHO05D005270 2.9e-29 131.3 71 87.3
Gohir.D05G195800 Gossypium hirsutum HOM05D004347 ORTHO05D005270 2.9e-29 131.3 72 86.1
Oeu031257.1 Olea europaea HOM05D004347 ORTHO05D005270 2.9e-29 131.3 72 86.1
Zm00001eb252020 Zea mays HOM05D004347 ORTHO05D005270 2.9e-29 131.3 72 86.1
CANSAT11G1506 Cannabis sativa HOM05D004347 ORTHO05D005270 3.8e-29 131.0 72 84.7
Nitab4.5_0003265g0100 Nicotiana tabacum HOM05D004347 ORTHO05D005270 3.8e-29 131.0 72 83.3
Sabra05G0177200 Salix brachista HOM05D004347 ORTHO05D005270 3.8e-29 131.0 72 86.1
ECA233G5914 Erigeron canadensis HOM05D004347 ORTHO05D005270 5.0e-29 130.6 71 87.3
Medtr3g112050 Medicago truncatula HOM05D004347 ORTHO05D005270 5.0e-29 130.6 72 84.7
vmacro04537 Vaccinium macrocarpon HOM05D004347 ORTHO05D005270 5.0e-29 130.6 72 88.9
Carub.0002s2216 Capsella rubella HOM05D004347 ORTHO05D005270 6.5e-29 130.2 71 85.9
HanXRQChr05g0152041 Helianthus annuus HOM05D004347 ORTHO05D005270 6.5e-29 130.2 72 84.7
SEGI_09245 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 6.5e-29 130.2 72 84.7
SEGI_25489 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 6.5e-29 130.2 72 84.7
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 8.5e-29 129.8 72 87.5
MD08G1028500 Malus domestica HOM05D004347 ORTHO05D005270 8.5e-29 129.8 72 86.1
SGA_v2.0_scaffold1G00165 Striga asiatica HOM05D004347 ORTHO05D005270 8.5e-29 129.8 72 84.7
Glyma.04G030500 Glycine max HOM05D004347 ORTHO05D005270 1.1e-28 129.4 72 83.3
Glyma.06G030600 Glycine max HOM05D004347 ORTHO05D005270 1.1e-28 129.4 72 83.3
Lj1g0017536 Lotus japonicus HOM05D004347 ORTHO05D005270 1.5e-28 129.0 72 84.7
Psat5g016520 Pisum sativum HOM05D004347 ORTHO05D005270 1.9e-28 128.6 72 83.3
CiPaw.07G159300 Carya illinoinensis HOM05D004347 ORTHO05D005270 2.5e-28 128.3 72 84.7
CBR_g28659 Chara braunii HOM05D004347 ORTHO05D005270 4.2e-28 127.5 72 81.9
Mapoly0003s0042 Marchantia polymorpha HOM05D004347 ORTHO05D005270 4.2e-28 127.5 72 83.3
ATR0568G211 Amborella trichopoda HOM05D004347 ORTHO05D005270 5.5e-28 127.1 72 80.6
HPP92_000284 Vanilla planifolia HOM05D004347 ORTHO05D005270 7.2e-28 126.7 72 81.9
Dinv36108 Davidia involucrata HOM05D004347 ORTHO05D005270 1.6e-27 125.6 65 92.3
Pp3c9_2740 Physcomitrium patens HOM05D004347 ORTHO05D005270 2.7e-27 124.8 72 80.6
Pp3c9_2745 Physcomitrium patens HOM05D004347 ORTHO05D005270 2.7e-27 124.8 72 80.6
Actinidia37998 Actinidia chinensis HOM05D004347 ORTHO05D005270 1.0e-26 122.9 65 90.8
Pp3c15_7070 Physcomitrium patens HOM05D004347 ORTHO05D005270 1.4e-26 122.5 72 79.2
PSO409G0040 Papaver somniferum HOM05D004347 ORTHO05D005270 1.8e-26 122.1 65 89.2
CAN.G312.9 Capsicum annuum HOM05D004347 ORTHO05D005270 5.2e-26 120.6 72 79.2
ClCG05G018820 Citrullus lanatus HOM05D004347 ORTHO05D005270 6.8e-26 120.2 91 68.1
arahy.Tifrunner.gnm1.ann1.S41V7E Arachis hypogaea HOM05D004347 ORTHO05D005270 8.8e-26 119.8 67 85.1
arahy.Tifrunner.gnm1.ann1.YLZT45 Arachis hypogaea HOM05D004347 ORTHO05D005270 8.8e-26 119.8 67 85.1
TPR.G12496 Trifolium pratense HOM05D004347 ORTHO05D005270 2.6e-25 118.2 65 84.6
Nn5g29661 Nelumbo nucifera HOM05D004347 ORTHO05D005270 5.7e-25 117.1 65 84.6
PRCOL_00003337 Prasinoderma coloniale HOM05D004347 ORTHO05D005270 5.7e-25 117.1 72 76.4
Cre12.g489700 Chlamydomonas reinhardtii HOM05D004347 ORTHO05D005270 2.2e-24 115.2 72 76.4
MCO01G430 Micromonas commoda HOM05D004347 ORTHO05D005270 3.7e-24 114.4 72 70.8
Lj5g0006178 Lotus japonicus HOM05D004347 ORTHO05D005270 6.3e-24 113.6 72 69.4
TPR.G20180 Trifolium pratense HOM05D004347 ORTHO05D005270 6.3e-24 113.6 72 68.1
Medtr1g022420 Medicago truncatula HOM05D004347 ORTHO05D005270 8.3e-24 113.2 72 68.1
Psat6g009200 Pisum sativum HOM05D004347 ORTHO05D005270 1.2e-22 109.4 72 65.3
Zm00001eb403320 Zea mays HOM05D004347 ORTHO05D005270 2.9e-21 104.8 58 82.8
Ah.07g201940 Amaranthus hybridus HOM05D004347 ORTHO05D005270 8.9e-18 93.2 56 78.6
Peaxi162Scf00140g00025 Petunia axillaris HOM05D004347 ORTHO05D005270 1.2e-17 92.8 57 80.7
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 1.1e-12 76.3 46 73.9
Haze_26855 Corylus avellana HOM05D000826 ORTHO05D004603 8.0e-11 70.1 72 48.6
Cfa022292 Carpinus fangiana HOM05D004347 ORTHO05D005270 1.4e-07 59.3 72 40.3
Lj2A1046T54 Lonicera japonica HOM05D004347 ORTHO05D005270 3.2e-07 58.2 30 90.0


User provided reference genes

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