Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 6.1e-109 397.5 204 100.0
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.5e-83 313.2 201 78.6
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.7e-82 309.7 201 79.1
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.2e-82 309.3 201 78.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.9e-82 308.9 205 77.1
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 8.4e-82 307.4 201 78.1
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.4e-81 306.6 201 77.6
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.9e-81 306.2 201 79.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 7.1e-81 304.3 201 78.6
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.1e-80 302.8 201 76.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.7e-80 302.4 201 76.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.8e-80 300.8 201 77.6
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.3e-79 300.1 201 78.1
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 2.3e-79 299.3 201 76.1
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.0e-79 298.9 201 76.1
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 8.6e-79 297.4 202 74.8
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 8.6e-79 297.4 201 75.6
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 8.6e-79 297.4 201 76.1
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.5e-78 296.6 201 75.1
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.5e-78 296.6 201 75.1
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 9.6e-78 293.9 198 74.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.2e-77 293.5 201 75.1
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.2e-77 293.5 201 75.6
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.6e-77 293.1 198 73.7
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.6e-77 293.1 201 74.1
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.1e-77 292.7 201 74.6
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.8e-77 292.4 205 74.6
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.8e-77 292.4 201 75.6
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.7e-77 291.6 201 74.6
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 6.2e-77 291.2 202 75.2
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 6.2e-77 291.2 199 75.9
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 8.1e-77 290.8 206 74.3
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 8.1e-77 290.8 201 74.1
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.4e-76 290.0 204 74.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.8e-76 289.7 201 75.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 3.1e-76 288.9 205 73.7
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 4.0e-76 288.5 203 74.9
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.0e-76 288.5 205 73.2
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 4.0e-76 288.5 198 74.7
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 5.2e-76 288.1 204 73.5
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 6.8e-76 287.7 201 75.1
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 8.9e-76 287.3 202 74.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.2e-75 287.0 202 74.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.2e-75 287.0 198 71.7
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.0e-75 286.2 205 71.2
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.0e-75 286.2 205 71.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 3.4e-75 285.4 201 73.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.8e-75 284.6 201 71.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 7.6e-75 284.3 201 72.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.6e-75 284.3 194 74.7
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 9.9e-75 283.9 205 73.2
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 9.9e-75 283.9 201 72.1
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 9.9e-75 283.9 199 73.9
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.7e-74 283.1 198 72.2
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 1.7e-74 283.1 199 73.4
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 2.2e-74 282.7 201 72.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.9e-74 282.3 201 72.6
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 4.9e-74 281.6 201 71.1
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.4e-74 281.2 207 70.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 6.4e-74 281.2 207 70.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.4e-73 280.0 202 72.3
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.4e-73 279.3 203 71.9
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 3.2e-73 278.9 189 75.7
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 5.4e-73 278.1 197 71.1
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.4e-73 278.1 193 75.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 5.4e-73 278.1 199 71.4
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 7.1e-73 277.7 193 74.6
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.3e-73 277.3 193 75.1
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 9.3e-73 277.3 201 70.6
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.2e-72 276.9 198 70.7
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 3.5e-72 275.4 201 71.1
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 6.0e-72 274.6 198 70.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.0e-71 273.9 310 52.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.7e-71 273.1 198 71.7
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.7e-71 273.1 201 70.1
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 6.6e-71 271.2 198 71.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.9e-70 269.6 203 68.5
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 9.6e-70 267.3 197 71.1
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 4.8e-69 265.0 266 57.1
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 4.0e-68 261.9 207 67.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 6.9e-68 261.2 201 68.7
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.0e-67 259.6 205 68.8
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.4e-67 258.8 189 69.8
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 9.9e-67 257.3 201 67.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.8e-66 255.4 196 64.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 6.4e-66 254.6 198 68.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.4e-65 252.7 229 60.3
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.2e-65 251.9 229 59.8
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.0e-59 233.0 204 61.3
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.6e-59 232.6 207 59.9
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 4.5e-59 231.9 201 61.2
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-57 226.9 191 62.3
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.4e-57 226.9 201 61.7
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.1e-57 224.6 209 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 7.6e-51 204.5 200 54.0
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.5e-46 190.3 107 88.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.4e-44 183.7 111 80.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 4.1e-44 182.2 112 83.0
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 5.7e-38 161.8 82 100.0
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.9e-31 139.0 129 61.2
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.3e-30 135.6 113 62.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.4e-28 130.6 114 60.5
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.1e-28 129.0 89 70.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.9e-26 122.9 135 51.9
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.7e-24 116.3 95 66.3
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 7.9e-24 114.8 76 75.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 5.7e-22 108.6 104 58.7
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-22 108.6 108 50.0
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.3e-21 105.1 65 76.9
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.1e-20 104.4 162 38.9
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 4.5e-19 99.0 104 55.8
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 1.5e-17 94.0 159 37.1
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.2e-14 84.3 76 61.8
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-14 83.2 84 54.8
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.7e-11 73.2 164 31.7


User provided reference genes

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