Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.2e-157 559.7 272 100.0
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 8.4e-130 467.2 278 84.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.3e-126 455.3 255 88.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.8e-125 452.2 249 89.6
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 8.4e-122 440.7 299 75.3
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 1.6e-120 436.4 279 80.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.9e-119 431.8 276 79.3
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 8.7e-119 430.6 276 77.9
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.6e-117 426.4 254 83.1
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 6.3e-117 424.5 254 82.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 8.2e-117 424.1 278 76.6
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.4e-116 423.3 281 75.4
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.4e-116 423.3 272 77.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.0e-116 420.6 263 79.8
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 9.0e-116 420.6 275 77.8
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.2e-115 420.2 280 76.4
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.0e-115 419.5 277 76.2
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.6e-115 419.1 278 76.3
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 2.6e-115 419.1 270 77.4
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 4.5e-115 418.3 267 78.7
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 4.5e-115 418.3 263 79.5
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 5.9e-115 417.9 269 78.4
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.2e-114 416.0 267 78.3
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 3.8e-114 415.2 254 81.9
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 3.8e-114 415.2 283 74.9
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.8e-114 415.2 283 74.9
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 5.0e-114 414.8 274 75.9
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 5.0e-114 414.8 267 77.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.5e-114 414.5 276 75.0
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 8.4e-114 414.1 278 75.2
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.1e-113 413.7 283 74.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.1e-113 413.7 283 74.6
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.9e-113 412.9 284 74.3
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 2.5e-113 412.5 279 76.7
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 3.2e-113 412.1 262 78.6
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 5.5e-113 411.4 272 77.2
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 9.3e-113 410.6 265 78.5
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 2.7e-112 409.1 275 73.5
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 3.5e-112 408.7 282 74.5
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 3.5e-112 408.7 267 77.9
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 6.1e-112 407.9 271 77.1
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 6.1e-112 407.9 254 80.3
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 7.9e-112 407.5 252 80.2
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.0e-111 407.1 271 76.8
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.3e-111 406.8 267 76.0
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.8e-111 406.4 305 70.2
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.8e-111 406.4 253 80.6
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.1e-111 404.8 270 75.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.1e-110 403.7 249 80.7
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 1.5e-110 403.3 273 75.8
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.9e-110 402.9 210 90.5
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.9e-110 402.9 276 74.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 3.3e-110 402.1 275 73.8
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 5.7e-110 401.4 274 74.1
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 3.7e-109 398.7 259 74.9
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 6.3e-109 397.9 279 73.5
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 6.3e-109 397.9 276 73.9
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 2.4e-108 396.0 255 76.1
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 2.4e-108 396.0 273 74.7
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.2e-107 393.7 253 77.9
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.5e-107 393.3 285 72.6
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 2.6e-107 392.5 253 77.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.6e-107 392.5 265 74.7
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.9e-107 391.3 268 72.8
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 5.9e-107 391.3 276 72.5
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.0e-106 390.6 239 80.8
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.0e-106 390.6 246 78.9
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-106 389.8 274 73.4
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.9e-106 389.0 309 66.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 6.5e-106 387.9 250 75.6
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.1e-105 387.1 278 70.5
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 3.2e-105 385.6 256 76.6
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.2e-105 385.2 271 73.1
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 5.5e-105 384.8 256 76.6
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.6e-104 382.1 270 71.9
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 5.1e-103 378.3 281 69.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 8.8e-103 377.5 271 73.4
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.0e-102 376.3 284 69.0
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 3.3e-102 375.6 275 71.6
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 3.3e-102 375.6 261 74.3
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.3e-101 373.6 280 68.2
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 2.2e-101 372.9 250 73.6
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 4.8e-101 371.7 277 69.0
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 8.2e-101 370.9 281 66.2
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 8.2e-101 370.9 281 66.2
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.8e-100 369.8 284 66.5
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 2.4e-100 369.4 262 70.2
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 4.1e-100 368.6 261 70.5
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 4.1e-100 368.6 277 67.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.9e-100 367.9 284 65.5
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.9e-100 367.9 284 65.5
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 6.9e-100 367.9 254 72.4
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.2e-99 367.1 285 66.0
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.2e-99 367.1 285 66.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.5e-99 366.7 308 63.0
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 2.0e-99 366.3 263 69.6
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.6e-99 365.9 261 69.7
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.9e-97 359.8 272 69.5
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.3e-95 352.8 266 68.0
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.1e-94 350.5 206 79.1
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.5e-94 350.1 231 80.5
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.6e-94 349.4 223 76.7
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 7.4e-94 347.8 261 67.8
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 7.0e-92 341.3 261 68.2
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.0e-90 337.4 256 66.8
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.7e-90 336.7 252 66.7
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.7e-86 320.9 256 65.6
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.5e-81 307.0 260 64.2
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.5e-81 306.2 198 76.8
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.2e-81 305.4 266 62.8
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 6.3e-77 291.6 248 58.9
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 3.1e-76 289.3 194 74.2
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 2.0e-75 286.6 194 71.1
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.2e-73 279.3 179 77.1
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 5.5e-73 278.5 224 61.6
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 4.7e-72 275.4 177 76.3
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 6.1e-72 275.0 194 70.6
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 8.0e-64 248.1 189 69.3
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 4.0e-63 245.7 271 48.3
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 9.8e-62 241.1 253 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.8e-60 236.9 219 55.3
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 4.6e-59 232.3 276 51.4
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.1e-48 196.8 173 56.6
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 3.4e-46 189.5 203 47.3
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-42 177.2 168 57.1
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 1.6e-35 154.1 278 34.9
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.1e-31 139.8 85 84.7
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 8.4e-29 131.7 80 82.5
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 3.0e-26 123.2 272 31.6
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 5.1e-26 122.5 170 40.0
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 2.0e-22 110.5 54 96.3
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 7.6e-22 108.6 57 91.2
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 7.9e-19 98.6 52 88.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.7e-08 63.2 151 31.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 4.0e-07 59.7 178 28.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 4.0e-07 59.7 156 29.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.3e-07 59.3 178 28.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.5e-06 57.8 194 26.8
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.5e-06 57.8 185 26.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.0e-06 57.4 180 27.8
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 2.6e-06 57.0 56 60.7
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.4e-06 56.6 186 27.4
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 7.6e-06 55.5 159 27.7
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 7.6e-06 55.5 173 26.6
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 7.6e-06 55.5 174 26.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 7.6e-06 55.5 185 28.1
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 7.6e-06 55.5 178 24.7
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.0e-05 55.1 185 27.0


User provided reference genes

Program Settings