Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A679T10 Lonicera japonica HOM05D005862 ORTHO05D007731 8.5e-278 959.9 557 100.0
Lj2C685T2 Lonicera japonica HOM05D005862 ORTHO05D007731 1.4e-195 686.8 437 84.4
HPP92_027606 Vanilla planifolia HOM05D005862 ORTHO05D007731 8.7e-166 587.8 553 60.0
CDE01G0240 Ceratophyllum demersum HOM05D005862 ORTHO05D007731 1.6e-159 567.0 573 52.9
Ciclev10013854m.g Citrus clementina HOM05D005862 ORTHO05D007731 1.9e-152 543.5 575 56.5
Actinidia34295 Actinidia chinensis HOM05D005862 ORTHO05D007731 1.3e-148 530.8 344 78.5
CANSAT11G1786 Cannabis sativa HOM05D005862 ORTHO05D007731 2.8e-148 529.6 340 77.1
ECA232G4753 Erigeron canadensis HOM05D005862 ORTHO05D007731 2.8e-148 529.6 348 73.6
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 5.3e-147 525.4 577 54.1
CSS0041877 Camellia sinensis var. sinensis HOM05D005862 ORTHO05D007731 9.1e-147 524.6 341 76.2
QL09p026590 Quercus lobata HOM05D005862 ORTHO05D007731 9.1e-147 524.6 342 77.2
MSTRG.26941 Avicennia marina HOM05D005862 ORTHO05D007731 7.7e-146 521.5 340 75.0
FvH4_4g17300 Fragaria vesca HOM05D005862 ORTHO05D007731 7.7e-146 521.5 350 73.7
SGA_v2.0_scaffold44G16880 Striga asiatica HOM05D005862 ORTHO05D007731 5.0e-145 518.8 348 73.6
Haze_22244 Corylus avellana HOM05D005862 ORTHO05D002549 4.2e-144 515.8 338 75.1
FAN12G1215 Fragaria x ananassa HOM05D005862 ORTHO05D007731 5.5e-144 515.4 359 72.1
FAN12G4319 Fragaria x ananassa HOM05D005862 ORTHO05D007731 5.5e-144 515.4 359 72.1
Nn3g19139 Nelumbo nucifera HOM05D005862 ORTHO05D007731 9.4e-144 514.6 333 75.7
Aqoxy1G00072 Aquilegia oxysepala HOM05D005862 ORTHO05D007731 1.0e-142 511.1 327 75.8
Sc25g0001110 Simmondsia chinensis HOM05D005862 ORTHO05D007731 2.3e-142 510.0 318 77.4
TWI60G0141 Tripterygium wilfordii HOM05D005862 ORTHO05D007731 2.3e-142 510.0 349 72.8
Migut.F00109 Erythranthe guttata HOM05D005862 ORTHO05D007731 2.6e-141 506.5 323 75.5
Potri.007G123900 Populus trichocarpa HOM05D005862 ORTHO05D007731 3.3e-141 506.1 343 72.3
vmacro06486 Vaccinium macrocarpon HOM05D005862 ORTHO05D007731 5.7e-141 505.4 330 77.0
Cc11_g03910 Coffea canephora HOM05D005862 ORTHO05D007731 1.3e-140 504.2 348 72.4
Gohir.D03G049400 Gossypium hirsutum HOM05D005862 ORTHO05D007731 1.7e-140 503.8 324 77.2
HanXRQChr04g0111711 Helianthus annuus HOM05D005862 ORTHO05D007731 3.7e-140 502.7 339 72.3
Sopen03g027570 Solanum pennellii HOM05D005862 ORTHO05D007731 1.1e-139 501.1 338 74.3
MELO3C025691.2 Cucumis melo HOM05D005862 ORTHO05D007731 1.4e-139 500.7 345 72.5
Potri.017G036400 Populus trichocarpa HOM05D005862 ORTHO05D007731 3.1e-139 499.6 329 74.2
Solyc03g096830.4 Solanum lycopersicum HOM05D005862 ORTHO05D007731 1.2e-138 497.7 332 74.1
FAN17G0149 Fragaria x ananassa HOM05D005862 ORTHO05D007731 5.9e-138 495.4 329 74.2
FAN07G2680 Fragaria x ananassa HOM05D005862 ORTHO05D007731 7.7e-138 495.0 350 70.9
PGR042G0369 Punica granatum HOM05D005862 ORTHO05D007731 7.7e-138 495.0 325 74.5
arahy.Tifrunner.gnm1.ann1.UAU06L Arachis hypogaea HOM05D005862 ORTHO05D007731 1.3e-137 494.2 554 61.0
Manes.08G165200 Manihot esculenta HOM05D005862 ORTHO05D007731 2.2e-137 493.4 325 75.4
PSO063G7658 Papaver somniferum HOM05D005862 ORTHO05D007731 2.2e-137 493.4 326 72.1
arahy.Tifrunner.gnm1.ann1.LMCB5G Arachis hypogaea HOM05D005862 ORTHO05D007731 3.8e-137 492.7 554 60.8
arahy.Tifrunner.gnm1.ann1.B0Y075 Arachis hypogaea HOM05D005862 ORTHO05D007731 2.5e-136 490.0 554 60.6
Nitab4.5_0000021g0260 Nicotiana tabacum HOM05D005862 ORTHO05D007731 1.2e-135 487.6 344 72.1
Dinv29179 Davidia involucrata HOM05D005862 ORTHO05D007731 1.6e-135 487.3 327 74.9
Cfa013617 Carpinus fangiana HOM05D005862 ORTHO05D007731 4.7e-135 485.7 302 79.5
Lalb_Chr25g0279841 Lupinus albus HOM05D005862 ORTHO05D007731 4.7e-135 485.7 340 70.6
Psat2g187320 Pisum sativum HOM05D005862 ORTHO05D007731 3.0e-134 483.0 327 72.2
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 6.8e-134 481.9 333 72.1
Gorai.003G050800 Gossypium raimondii HOM05D005862 ORTHO05D007731 8.8e-134 481.5 310 77.4
Sabra07G0100300 Salix brachista HOM05D005862 ORTHO05D007731 8.8e-134 481.5 329 71.7
Oeu055444.1 Olea europaea HOM05D005862 ORTHO05D007731 3.4e-133 479.6 318 75.2
AUR62002419 Chenopodium quinoa HOM05D005862 ORTHO05D007731 1.7e-132 477.2 384 64.8
EL10Ac3g06117 Beta vulgaris HOM05D005862 ORTHO05D007731 2.8e-132 476.5 348 70.1
Lsat_1_v5_gn_9_47361 Lactuca sativa HOM05D005862 ORTHO05D007731 3.7e-132 476.1 334 70.4
Gohir.A02G138900 Gossypium hirsutum HOM05D005862 ORTHO05D007731 4.1e-131 472.6 307 76.9
MBI04_g30800_MAGBIO Magnolia biondii HOM05D005862 ORTHO05D007731 5.4e-131 472.2 347 68.0
Medtr5g008300 Medicago truncatula HOM05D005862 ORTHO05D007731 1.6e-130 470.7 320 72.2
Rhsim03G0219600 Rhododendron simsii HOM05D005862 ORTHO05D007731 2.0e-130 470.3 331 72.8
ATR0568G095 Amborella trichopoda HOM05D005862 ORTHO05D007731 3.5e-130 469.5 321 69.2
GSVIVG01024457001 Vitis vinifera HOM05D005862 ORTHO05D007731 5.9e-130 468.8 297 77.8
MD07G1304500 Malus domestica HOM05D005862 ORTHO05D007731 5.0e-129 465.7 324 72.8
Carub.0003s1784 Capsella rubella HOM05D005862 ORTHO05D007731 1.9e-128 463.8 321 70.4
CAN.G303.67 Capsicum annuum HOM05D005862 ORTHO05D007731 1.9e-128 463.8 332 72.3
Thhalv10019896m.g Eutrema salsugineum HOM05D005862 ORTHO05D007731 1.9e-128 463.8 320 70.9
BolC5t33517H Brassica oleracea HOM05D005862 ORTHO05D007731 2.5e-128 463.4 344 67.2
Sp3g16230 Schrenkiella parvula HOM05D005862 ORTHO05D007731 9.4e-128 461.5 321 69.8
AT3G18110 Arabidopsis thaliana HOM05D005862 ORTHO05D007731 1.2e-127 461.1 321 70.4
THA.LOC104820358 Tarenaya hassleriana HOM05D005862 ORTHO05D007731 1.2e-127 461.1 339 68.1
Thecc.05G207900 Theobroma cacao HOM05D005862 ORTHO05D007731 1.6e-127 460.7 286 78.3
AL3G31270 Arabidopsis lyrata HOM05D005862 ORTHO05D007731 3.6e-127 459.5 318 70.8
CARHR093420 Cardamine hirsuta HOM05D005862 ORTHO05D007731 1.0e-126 458.0 320 69.7
Glyma.11G013700 Glycine max HOM05D005862 ORTHO05D007731 1.0e-126 458.0 312 72.1
Ca_24470_v3 Cicer arietinum L. HOM05D005862 ORTHO05D007731 1.4e-126 457.6 313 71.6
Hund09764 Selenicereus undatus HOM05D005862 ORTHO05D007731 1.4e-126 457.6 324 70.1
RcHm_v2.0_Chr4g0421271 Rosa chinensis HOM05D005862 ORTHO05D007731 1.8e-126 457.2 292 77.1
COL.COLO4_08905 Corchorus olitorius HOM05D005862 ORTHO05D007731 4.0e-126 456.1 320 72.5
Os06g0199100 Oryza sativa ssp. japonica HOM05D005862 ORTHO05D007731 8.8e-126 454.9 557 54.6
BraA05t22001Z Brassica rapa HOM05D005862 ORTHO05D007731 2.6e-125 453.4 321 68.8
Sed0009679 Sechium edule HOM05D005862 ORTHO05D007731 2.6e-125 453.4 310 73.5
Eucgr.A02953 Eucalyptus grandis HOM05D005862 ORTHO05D007731 4.4e-125 452.6 293 75.8
Nitab4.5_0002302g0060 Nicotiana tabacum HOM05D005862 ORTHO05D007731 4.4e-125 452.6 332 70.8
CsaV3_6G018920 Cucumis sativus L. HOM05D005862 ORTHO05D007731 1.7e-124 450.7 330 68.8
Prupe.6G174500 Prunus persica HOM05D005862 ORTHO05D007731 2.8e-124 449.9 301 75.1
VMungo1215G3088 Vigna mungo HOM05D005862 ORTHO05D007731 1.4e-123 447.6 316 69.9
LjContig00222g0010720 Lotus japonicus HOM05D005862 ORTHO05D007731 5.4e-123 445.7 318 70.4
Peaxi162Scf01650g00056 Petunia axillaris HOM05D005862 ORTHO05D007731 3.5e-122 443.0 331 69.2
Phvul.002G036500 Phaseolus vulgaris HOM05D005862 ORTHO05D007731 3.8e-121 439.5 301 71.1
Aa31LG8G4960 Aethionema arabicum HOM05D005862 ORTHO05D007731 2.1e-119 433.7 321 67.6
A05p31680 Brassica napus HOM05D005862 ORTHO05D007731 4.7e-119 432.6 319 67.4
TAR375G0634 Trochodendron aralioides HOM05D005862 ORTHO05D007731 5.6e-112 409.1 247 78.5
DCAR_006500 Daucus carota HOM05D005862 ORTHO05D007731 5.8e-109 399.1 327 63.6
BolC5t33548H Brassica oleracea HOM05D005862 ORTHO05D007731 2.8e-103 380.2 393 53.7
Duzib177G0812 Durio zibethinus HOM05D005862 ORTHO05D007731 1.6e-98 364.4 323 60.4
SalBow4G1238 Salvia bowleyana HOM05D005862 ORTHO05D007731 4.3e-96 356.3 262 69.1
AUR62021709 Chenopodium quinoa HOM05D005862 ORTHO05D007731 2.6e-93 347.1 314 59.6
SMO356G0443 Selaginella moellendorffii HOM05D005862 ORTHO05D007731 2.5e-80 303.9 334 47.3
unitig_747.g21705 Utricularia gibba HOM05D005862 ORTHO05D007731 6.4e-76 289.3 179 77.1
Mapoly0068s0065 Marchantia polymorpha HOM05D005862 ORTHO05D007731 2.7e-74 283.9 279 54.5
AUR62023769 Chenopodium quinoa HOM05D005862 ORTHO05D007731 4.9e-68 263.1 175 73.7
Ah.07g202940 Amaranthus hybridus HOM05D005862 ORTHO05D007731 4.2e-67 260.0 174 71.8
PGSC0003DMG400000542 Solanum tuberosum HOM05D005862 ORTHO05D007731 1.0e-65 255.4 168 76.2
Atru.chr12.2038 Acer truncatum HOM05D005862 ORTHO05D007731 1.8e-65 254.6 152 78.3
AagrBONN_evm.TU.Sc2ySwM_344.2098 Anthoceros agrestis HOM05D005862 ORTHO05D007731 5.1e-65 253.1 277 47.3
Atru.chr12.2039 Acer truncatum HOM05D005862 ORTHO05D007731 1.1e-64 251.9 174 74.1
C05p48080 Brassica napus HOM05D005862 ORTHO05D007731 1.5e-64 251.5 171 69.6
Ah.07g202930 Amaranthus hybridus HOM05D005862 ORTHO05D007731 3.3e-64 250.4 172 72.7
Pp3c25_7340 Physcomitrium patens HOM05D005862 ORTHO05D007731 2.1e-63 247.7 343 37.6
Cpa.g.sc39.46 Carica papaya HOM05D005862 ORTHO05D007731 8.1e-63 245.7 180 68.9
SEGI_36659 Sequoiadendron giganteum HOM05D005862 ORTHO05D007731 1.1e-59 235.3 197 60.4
CiPaw.08G043700 Carya illinoinensis HOM05D005862 ORTHO05D007731 1.6e-55 221.5 141 73.8
Zm00001eb373900 Zea mays HOM05D005862 ORTHO05D007731 1.3e-47 195.3 155 60.0
Atru.chr12.1739 Acer truncatum HOM05D005862 ORTHO05D007731 2.0e-40 171.4 111 76.6
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 1.8e-38 164.9 295 35.9
CDE12G0098 Ceratophyllum demersum HOM05D005862 ORTHO05D007731 2.9e-36 157.5 128 59.4
SEGI_40805 Sequoiadendron giganteum HOM05D005862 ORTHO05D007731 2.2e-31 141.4 192 37.0
C05p47250 Brassica napus HOM05D005862 ORTHO05D007731 8.2e-31 139.4 189 42.3
BolC5t33451H Brassica oleracea HOM05D005862 ORTHO05D007731 8.2e-31 139.4 189 42.3
SalBow4G3068 Salvia bowleyana HOM05D005862 ORTHO05D007731 5.0e-20 103.6 71 69.0
Lalb_Chr13g0304341 Lupinus albus HOM05D002244 ORTHO05D002269 5.9e-13 80.1 275 25.8
Cpa.g.sc39.47 Carica papaya HOM05D005862 ORTHO05D007731 7.7e-13 79.7 168 40.5
AT4G16390 Arabidopsis thaliana HOM05D002244 ORTHO05D002269 3.8e-12 77.4 283 23.7
CARHR222760 Cardamine hirsuta HOM05D002244 ORTHO05D002269 8.6e-12 76.3 284 23.6
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 8.6e-12 76.3 348 23.6
THA.LOC104815477 Tarenaya hassleriana HOM05D002244 ORTHO05D002269 1.1e-11 75.9 282 24.1
AL7G38630 Arabidopsis lyrata HOM05D002244 ORTHO05D002269 1.5e-11 75.5 283 23.3
Carub.0007s2514 Capsella rubella HOM05D002244 ORTHO05D002269 1.5e-11 75.5 283 24.4
MBI10_g16708_MAGBIO Magnolia biondii HOM05D005862 ORTHO05D007731 1.9e-11 75.1 50 74.0
VMungo1215G0876 Vigna mungo HOM05D002244 ORTHO05D002269 3.2e-11 74.3 275 24.0
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 4.2e-11 73.9 151 32.5
Glyma.17G153900 Glycine max HOM05D002244 ORTHO05D002269 5.5e-11 73.6 335 21.2
arahy.Tifrunner.gnm1.ann1.BFSH12 Arachis hypogaea HOM05D002244 ORTHO05D002269 1.6e-10 72.0 294 23.5
Medtr2g026635 Medicago truncatula HOM05D002244 ORTHO05D002269 2.1e-10 71.6 271 22.9
Glyma.07G267500 Glycine max HOM05D002244 ORTHO05D002269 2.8e-10 71.2 276 23.9
Glyma.17G006500 Glycine max HOM05D002244 ORTHO05D002269 1.8e-09 68.6 276 23.6
Ah.09g233970 Amaranthus hybridus HOM05D002244 ORTHO05D002269 3.0e-09 67.8 278 24.1
Lj6g0010986 Lotus japonicus HOM05D002244 ORTHO05D002269 5.2e-09 67.0 150 28.0
VMungo0251G3088 Vigna mungo HOM05D002244 ORTHO05D002269 5.2e-09 67.0 337 19.9
CDE05G1508 Ceratophyllum demersum HOM05D002244 ORTHO05D002269 6.8e-09 66.6 275 22.2
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 8.8e-09 66.2 240 25.0
Phvul.003G229500 Phaseolus vulgaris HOM05D002244 ORTHO05D002269 2.0e-08 65.1 318 20.4
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 2.6e-08 64.7 266 22.2
Solyc09g042290.3 Solanum lycopersicum HOM05D002244 ORTHO05D002269 2.6e-08 64.7 282 23.0
TPR.G10561 Trifolium pratense HOM05D002244 ORTHO05D002269 2.6e-08 64.7 242 23.6
ClCG01G010980 Citrullus lanatus HOM05D002244 ORTHO05D002269 3.4e-08 64.3 275 22.9
Glyma.09G013600 Glycine max HOM05D002244 ORTHO05D002269 3.4e-08 64.3 276 22.8
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 3.4e-08 64.3 250 21.2
Glyma.05G113300 Glycine max HOM05D002244 ORTHO05D002269 4.4e-08 63.9 316 20.6
PSO302G0128 Papaver somniferum HOM05D002244 ORTHO05D002269 4.4e-08 63.9 281 22.4
TPR.G10585 Trifolium pratense HOM05D002244 ORTHO05D002269 4.4e-08 63.9 287 23.7
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 5.7e-08 63.5 379 24.5
Ca_00755_v3 Cicer arietinum L. HOM05D002244 ORTHO05D002269 5.7e-08 63.5 292 23.6
Haze_07007 Corylus avellana HOM05D002244 ORTHO05D002269 5.7e-08 63.5 279 24.4
Psat1g174360 Pisum sativum HOM05D002244 ORTHO05D002269 5.7e-08 63.5 279 23.3
AUR62012838 Chenopodium quinoa HOM05D002244 ORTHO05D002269 7.5e-08 63.2 280 22.9
Ca_00756_v3 Cicer arietinum L. HOM05D002244 ORTHO05D002269 7.5e-08 63.2 290 23.4
Ca_21003_v3 Cicer arietinum L. HOM05D002244 ORTHO05D002269 9.8e-08 62.8 279 22.9
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.7e-07 62.0 273 23.4
MELO3C026075.2 Cucumis melo HOM05D002244 ORTHO05D002269 1.7e-07 62.0 273 23.1
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 1.7e-07 62.0 199 25.6
Cfa000046 Carpinus fangiana HOM05D002244 ORTHO05D002269 2.2e-07 61.6 278 23.7
Lj6g0009459 Lotus japonicus HOM05D002244 ORTHO05D002269 3.7e-07 60.8 330 24.5
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.7e-07 60.8 158 23.4
Sed0013425 Sechium edule HOM05D002244 ORTHO05D002269 3.7e-07 60.8 341 23.2
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 3.7e-07 60.8 177 27.7
Cc08_g02420 Coffea canephora HOM05D002244 ORTHO05D002269 8.3e-07 59.7 348 21.3
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 1.8e-06 58.5 95 34.7
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 2.4e-06 58.2 343 19.2
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 2.4e-06 58.2 319 21.9
Lalb_Chr15g0088161 Lupinus albus HOM05D002244 ORTHO05D002269 3.1e-06 57.8 210 23.3
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 4.1e-06 57.4 217 20.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 5.4e-06 57.0 264 23.1
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 5.4e-06 57.0 150 28.7
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 5.4e-06 57.0 150 28.7
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 7.0e-06 56.6 91 36.3
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 7.0e-06 56.6 289 21.1


User provided reference genes

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