Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.7e-307 1058.5 536 100.0
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.5e-287 992.3 534 90.8
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 1.5e-287 992.3 534 92.3
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 1.3e-286 989.2 534 92.3
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.4e-285 985.7 534 91.6
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.8e-285 985.3 534 91.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.8e-285 985.3 534 91.2
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 4.0e-285 984.2 534 91.4
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 5.3e-285 983.8 534 91.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 9.0e-285 983.0 534 90.8
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 1.5e-284 982.2 534 91.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 1.5e-284 982.2 534 91.4
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 2.0e-284 981.9 534 89.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 2.0e-284 981.9 534 91.0
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 2.6e-284 981.5 534 90.8
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 3.4e-284 981.1 534 90.3
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 3.4e-284 981.1 534 90.6
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 3.4e-284 981.1 534 90.8
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 7.6e-284 979.9 534 90.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 1.3e-283 979.2 534 90.6
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.3e-283 979.2 534 90.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.3e-283 979.2 534 91.2
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.3e-283 979.2 534 91.2
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.3e-283 979.2 533 90.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.7e-283 978.8 534 90.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.9e-283 978.0 534 90.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 2.9e-283 978.0 534 90.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 3.8e-283 977.6 534 90.8
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 3.8e-283 977.6 534 91.2
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 4.9e-283 977.2 534 90.1
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.4e-283 976.9 534 90.4
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 6.4e-283 976.9 534 91.2
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 8.4e-283 976.5 561 86.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.1e-282 976.1 528 91.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-282 976.1 534 90.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.1e-282 976.1 534 90.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 1.1e-282 976.1 534 89.5
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.4e-282 975.7 544 89.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.9e-282 975.3 534 90.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 1.9e-282 975.3 534 90.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.4e-282 974.9 534 90.4
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.4e-282 974.9 534 89.7
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 3.2e-282 974.5 534 89.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 4.2e-282 974.2 533 88.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 7.1e-282 973.4 533 90.2
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 7.1e-282 973.4 530 90.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 7.1e-282 973.4 534 90.3
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 3.5e-281 971.1 528 91.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.0e-281 970.3 534 90.1
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 6.0e-281 970.3 534 90.4
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 7.9e-281 969.9 534 89.9
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 7.9e-281 969.9 534 89.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 1.3e-280 969.1 534 89.7
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 1.8e-280 968.8 534 89.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 2.3e-280 968.4 534 89.7
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 3.0e-280 968.0 530 90.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 6.7e-280 966.8 534 89.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 8.7e-280 966.5 534 89.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.7e-280 966.5 534 89.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.1e-279 966.1 534 89.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 1.5e-279 965.7 534 88.4
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.9e-279 965.3 534 88.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 3.3e-279 964.5 534 89.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 5.6e-279 963.8 528 90.2
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 5.6e-279 963.8 534 89.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 5.6e-279 963.8 534 89.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 9.6e-279 963.0 534 88.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 1.6e-278 962.2 534 89.0
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.6e-278 962.2 534 88.6
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 2.1e-278 961.8 534 88.6
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 2.8e-278 961.4 534 88.6
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.8e-278 960.7 534 88.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 6.2e-278 960.3 534 88.0
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.4e-277 959.1 534 87.8
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.4e-277 959.1 527 89.9
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.8e-277 958.7 534 88.2
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.8e-277 958.7 534 87.8
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 2.4e-277 958.4 534 87.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 9.0e-277 956.4 534 87.5
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.4e-276 954.5 534 88.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 2.9e-275 951.4 534 86.9
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 2.9e-275 951.4 534 87.1
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 2.9e-275 951.4 534 87.1
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 2.9e-275 951.4 534 87.1
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 3.8e-275 951.0 534 87.1
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 3.8e-275 951.0 534 87.1
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 1.4e-274 949.1 534 86.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 2.5e-274 948.3 534 86.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 9.3e-274 946.4 534 86.0
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 3.5e-273 944.5 534 86.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 3.5e-273 944.5 534 85.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 3.0e-272 941.4 534 85.4
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 5.1e-272 940.6 534 86.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 8.7e-272 939.9 534 87.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 8.7e-272 939.9 534 86.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 5.7e-271 937.2 534 88.0
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 5.7e-271 937.2 534 85.6
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 2.4e-269 931.8 534 86.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 4.1e-269 931.0 534 86.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 1.0e-267 926.4 534 85.4
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 8.4e-267 923.3 534 84.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 3.0e-264 914.8 534 83.9
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 3.3e-263 911.4 534 83.5
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 6.3e-262 907.1 534 85.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 8.8e-256 886.7 534 81.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.1e-250 869.8 534 79.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.4e-250 869.4 533 79.9
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 3.7e-246 854.7 503 85.9
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.7e-241 838.6 503 83.7
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 2.7e-236 822.0 543 75.3
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.1e-229 798.5 438 90.2
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 6.5e-227 790.8 535 73.5
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.3e-214 750.0 534 72.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.2e-207 726.9 396 90.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.4e-205 719.9 535 68.4
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 5.0e-203 711.4 444 81.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.0e-195 685.6 539 64.0
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-194 683.7 535 69.2
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 4.7e-193 678.3 534 69.3
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 9.2e-189 664.1 398 81.7
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.2e-185 653.7 534 66.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.3e-178 628.6 446 73.5
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.5e-175 618.6 354 87.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.7e-156 556.2 541 53.8
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.4e-122 442.6 268 82.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.3e-115 420.2 527 44.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.4e-104 383.6 212 89.2
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 3.9e-94 349.7 193 88.1
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.9e-86 323.2 175 89.7
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.5e-82 311.2 231 69.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 5.4e-64 249.6 141 85.8
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.7e-57 228.0 273 48.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.7e-44 183.7 98 88.8
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.4e-40 171.8 99 85.9
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.0e-38 164.1 103 74.8
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.3e-36 158.7 83 91.6
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.6e-36 158.3 90 85.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.4e-35 155.2 137 59.1
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.4e-35 155.2 86 83.7
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.1e-35 154.1 80 91.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 3.4e-34 150.6 91 83.5
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 5.9e-34 149.8 91 82.4
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.5e-32 143.3 77 85.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 7.9e-31 139.4 76 88.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-27 129.0 66 92.4
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 7.4e-21 106.3 116 50.0
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.4e-19 102.1 53 88.7
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 3.1e-19 100.9 60 81.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.5e-17 93.2 63 69.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 6.5e-17 93.2 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.2e-15 89.0 49 83.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.0e-09 69.3 39 87.2
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 6.5e-09 66.6 43 72.1


User provided reference genes

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