Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1894.4 952 100.0
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1426.0 965 76.8
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1366.7 965 73.7
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1337.0 917 75.1
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1333.2 963 72.5
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1332.8 970 72.2
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1324.3 964 71.9
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1317.8 964 71.6
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1313.1 945 71.3
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1306.2 916 72.7
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1303.5 914 73.3
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1303.5 954 70.4
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1302.0 919 72.7
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 932 73.6
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 908 73.5
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 926 72.6
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1298.1 915 73.6
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1295.0 949 70.7
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1294.6 947 71.8
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1292.3 926 71.6
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1291.9 926 71.6
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1291.9 1024 67.1
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1290.0 926 72.8
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1288.1 985 69.0
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1287.7 943 71.5
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1286.6 926 71.3
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1285.4 967 70.0
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1284.6 919 71.3
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1283.9 952 69.7
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1283.5 917 72.1
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1280.0 967 69.5
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1278.8 947 69.2
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1278.1 917 71.6
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 915 71.9
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1276.2 961 70.6
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1273.1 963 69.2
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1272.7 913 73.2
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1271.5 914 72.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 916 71.0
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1269.6 920 71.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1265.4 952 69.0
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1260.0 891 72.2
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1259.6 965 68.9
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1259.2 965 69.3
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1257.3 952 69.9
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1252.3 915 71.5
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1250.7 961 69.0
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 912 71.1
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1244.6 911 70.8
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1244.2 887 72.7
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1242.6 960 67.6
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1241.9 890 71.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1239.9 964 68.0
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1239.6 967 67.5
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1230.7 969 68.1
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1230.3 966 68.3
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1230.3 945 68.4
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1229.9 995 66.3
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1224.5 898 70.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1218.0 984 66.2
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 1012 64.5
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 908 68.7
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 931 69.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1192.9 932 67.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1174.8 884 69.6
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1170.2 817 74.3
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1168.3 785 75.8
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1162.1 843 70.9
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1156.4 893 67.3
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1148.7 962 64.4
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1144.4 928 64.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 926 65.3
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1110.9 951 62.1
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1109.4 903 64.3
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1105.9 898 63.8
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1104.7 882 65.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1102.0 889 65.1
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1100.9 917 63.1
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1099.0 884 64.7
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1097.0 953 60.7
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1092.8 953 60.9
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1086.2 919 62.6
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1077.8 934 61.3
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1076.2 933 61.6
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 2.2e-310 1068.9 946 60.0
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.1e-309 1066.6 889 64.6
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 9.3e-309 1063.5 863 64.1
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 1.0e-307 1060.1 899 62.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.3e-307 1059.7 909 63.9
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 6.7e-307 1057.4 938 61.1
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 1.5e-306 1056.2 914 62.1
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 7.1e-301 1037.3 970 57.7
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 3.0e-291 1005.4 928 58.4
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 5.9e-287 991.1 814 64.4
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 4.5e-279 964.9 787 65.4
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.4e-258 895.2 647 73.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 5.7e-258 894.8 723 64.3
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.9e-254 882.5 602 74.3
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 8.8e-251 870.9 889 51.4
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.0e-250 869.8 611 74.5
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.8e-243 846.7 687 67.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 4.9e-241 838.6 903 49.5
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 6.1e-236 821.6 590 72.4
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.9e-209 733.0 854 50.4
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.1e-198 695.7 515 70.1
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 2.0e-194 683.7 915 44.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 3.8e-193 679.5 561 64.3
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 3.5e-183 646.4 449 71.9
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 4.6e-183 646.0 620 54.7
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 4.2e-176 622.9 534 62.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.7e-175 620.2 747 45.4
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 4.8e-172 609.4 422 72.0
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 9.4e-152 542.0 396 70.2
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.2e-125 455.3 393 64.6
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-112 411.4 273 77.3
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 4.4e-93 347.1 318 61.3
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 4.0e-86 323.9 216 77.8
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.2e-85 322.4 292 60.3
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.4e-85 320.5 343 54.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 7.9e-82 309.7 243 65.0
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 3.7e-55 221.1 240 50.8
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.5e-53 215.7 172 64.5
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.3e-44 186.0 225 49.3
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.9e-43 182.2 216 46.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.7e-39 167.9 172 57.0
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 5.0e-28 131.0 81 79.0
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 4.4e-24 117.9 82 72.0
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-23 113.6 272 33.1
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 9.1e-22 110.2 606 22.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.0e-20 106.7 139 51.1
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.0e-17 96.7 55 87.3
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.4e-14 86.3 69 65.2
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 5.2e-09 67.8 105 40.0
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 7.5e-08 63.9 55 60.0


User provided reference genes

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