Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 2.7e-48 194.9 92 100.0
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 5.2e-39 164.1 84 91.7
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 1.7e-37 159.1 84 90.5
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 2.2e-37 158.7 84 90.5
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.8e-37 158.3 83 90.4
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 4.8e-37 157.5 79 96.2
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 4.8e-37 157.5 84 90.5
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 6.3e-37 157.1 84 90.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.1e-36 156.4 84 89.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 1.4e-36 156.0 84 90.5
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 1.8e-36 155.6 84 88.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.8e-36 155.6 84 89.3
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.8e-36 155.6 80 90.0
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 3.1e-36 154.8 77 97.4
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 3.1e-36 154.8 84 88.1
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 5.3e-36 154.1 84 88.1
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 5.3e-36 154.1 79 92.4
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 7.0e-36 153.7 80 91.2
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 9.1e-36 153.3 84 86.9
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.2e-35 152.9 84 86.9
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 1.2e-35 152.9 84 86.9
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 1.2e-35 152.9 84 85.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.6e-35 152.5 84 86.9
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.6e-35 152.5 88 84.1
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.6e-35 152.5 84 88.1
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.0e-35 152.1 86 87.2
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 2.0e-35 152.1 83 89.2
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.0e-35 152.1 84 88.1
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 2.0e-35 152.1 84 88.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.0e-35 152.1 77 92.2
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 3.5e-35 151.4 92 83.7
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 3.5e-35 151.4 80 91.2
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 4.5e-35 151.0 82 86.6
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 5.9e-35 150.6 75 94.7
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 7.7e-35 150.2 76 94.7
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 7.7e-35 150.2 84 85.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 7.7e-35 150.2 74 95.9
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 7.7e-35 150.2 74 94.6
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.0e-34 149.8 80 88.8
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 1.0e-34 149.8 83 88.0
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 1.0e-34 149.8 73 97.3
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 1.3e-34 149.4 74 94.6
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 1.3e-34 149.4 73 95.9
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.3e-34 149.4 84 85.7
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.7e-34 149.1 74 94.6
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.7e-34 149.1 80 87.5
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.7e-34 149.1 80 87.5
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 2.2e-34 148.7 73 95.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.2e-34 148.7 73 95.9
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.2e-34 148.7 73 95.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.2e-34 148.7 73 95.9
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 2.2e-34 148.7 84 86.9
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 3.8e-34 147.9 97 76.3
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 3.8e-34 147.9 74 93.2
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 3.8e-34 147.9 74 93.2
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 5.0e-34 147.5 84 83.3
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 5.0e-34 147.5 73 94.5
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 5.0e-34 147.5 73 95.9
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 5.0e-34 147.5 72 95.8
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 6.5e-34 147.1 74 93.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 6.5e-34 147.1 77 89.6
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 8.5e-34 146.7 73 94.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 8.5e-34 146.7 73 94.5
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 8.5e-34 146.7 80 86.2
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 8.5e-34 146.7 74 93.2
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.1e-33 146.4 75 93.3
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 1.1e-33 146.4 76 89.5
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.5e-33 146.0 73 93.2
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.5e-33 146.0 72 95.8
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.9e-33 145.6 72 95.8
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.9e-33 145.6 73 91.8
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.9e-33 145.6 73 94.5
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.9e-33 145.6 73 93.2
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 2.5e-33 145.2 73 93.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.5e-33 145.2 73 93.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 3.2e-33 144.8 74 87.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 4.2e-33 144.4 70 97.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 5.5e-33 144.1 74 90.5
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 9.4e-33 143.3 84 79.8
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 1.6e-32 142.5 73 91.8
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 1.6e-32 142.5 73 91.8
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.7e-32 141.7 73 90.4
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.7e-32 141.7 73 90.4
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 2.7e-32 141.7 73 90.4
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 2.7e-32 141.7 72 88.9
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 4.7e-32 141.0 70 94.3
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 6.1e-32 140.6 84 81.0
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 8.0e-32 140.2 73 89.0
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 8.0e-32 140.2 72 87.5
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 1.0e-31 139.8 70 92.9
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 4.0e-31 137.9 73 84.9
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 1.2e-30 136.3 79 84.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 1.2e-30 136.3 71 93.0
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 2.8e-29 131.7 73 82.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 6.1e-24 114.0 84 72.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.3e-21 106.3 137 46.7
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.5e-17 92.8 49 81.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 7.2e-17 90.5 73 56.2
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-15 86.7 69 58.0
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.8e-15 85.9 43 95.3
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-14 83.2 70 52.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.5e-14 82.8 76 51.3
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 2.9e-10 68.6 32 93.8
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 8.6e-10 67.0 70 45.7
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.3e-09 64.7 34 85.3


User provided reference genes

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