Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.9e-232 808.9 438 100.0
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 2.6e-173 612.5 438 79.9
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.9e-168 596.3 438 77.9
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.4e-166 589.3 438 77.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.6e-162 576.6 438 75.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.7e-162 575.9 438 75.1
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.3e-161 572.8 438 76.0
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 3.3e-160 568.9 438 74.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.4e-158 563.5 438 74.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.8e-158 563.1 438 74.0
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.8e-158 563.1 438 73.3
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 2.4e-158 562.8 438 73.3
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.3e-158 561.6 438 73.7
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.3e-158 561.6 438 73.7
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 9.0e-158 560.8 438 72.4
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.5e-157 560.1 438 71.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.6e-157 559.3 438 73.7
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.4e-157 558.9 438 73.1
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.4e-157 558.9 438 73.5
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.9e-157 557.4 438 71.0
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.2e-156 556.2 438 72.8
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.2e-156 556.2 454 72.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.2e-156 556.2 438 73.5
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 4.9e-156 555.1 438 73.3
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.4e-156 554.3 438 73.3
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.4e-156 554.3 438 73.3
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 8.4e-156 554.3 439 73.6
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.4e-155 553.5 438 72.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 4.2e-155 552.0 448 73.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 4.2e-155 552.0 438 72.4
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 5.5e-155 551.6 438 72.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 9.3e-155 550.8 441 72.6
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-154 550.4 438 72.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-154 550.4 438 72.6
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.7e-154 549.3 438 72.8
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.0e-153 547.4 438 70.5
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.0e-153 547.4 438 72.6
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.3e-153 546.2 438 72.4
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.3e-153 546.2 438 71.2
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 5.1e-153 545.0 438 70.8
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 5.1e-153 545.0 438 70.8
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 8.7e-153 544.3 438 71.0
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 8.7e-153 544.3 436 71.3
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.1e-152 543.9 438 71.0
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.1e-152 543.9 438 72.4
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 4.3e-152 542.0 461 69.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.1e-150 535.8 438 67.1
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.0e-150 535.4 439 72.0
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.5e-149 533.5 438 71.5
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.0e-149 533.1 414 74.4
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 7.6e-149 531.2 414 74.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 7.6e-149 531.2 438 67.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.8e-148 528.9 438 70.5
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 3.8e-148 528.9 438 68.0
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.4e-147 526.9 438 70.8
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.9e-147 526.6 440 68.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.2e-146 523.9 422 71.6
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 5.1e-145 518.5 438 63.5
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 3.3e-144 515.8 438 63.5
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 4.3e-144 515.4 438 65.1
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 7.4e-144 514.6 438 63.2
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.2e-143 513.1 438 63.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 3.1e-142 509.2 438 63.0
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.1e-142 508.8 438 61.9
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.9e-140 502.7 441 62.8
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.8e-140 502.3 438 68.7
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.8e-140 502.3 440 68.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 5.0e-140 501.9 441 69.4
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 8.5e-140 501.1 441 69.4
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.4e-139 500.4 438 63.0
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 7.2e-139 498.0 414 70.5
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 2.1e-138 496.5 438 68.3
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 6.1e-138 495.0 438 68.7
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 7.9e-138 494.6 471 64.5
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-137 494.2 438 59.6
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.8e-137 493.4 440 68.2
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 2.3e-137 493.0 438 61.9
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 3.0e-137 492.7 440 61.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 3.9e-137 492.3 438 61.6
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-136 490.3 438 61.4
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.5e-136 490.3 438 61.4
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 5.7e-136 488.4 438 68.3
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 6.9e-134 481.5 439 66.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.3e-132 477.2 439 64.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 6.5e-132 474.9 438 65.5
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.4e-131 473.8 456 64.7
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 7.9e-130 468.0 422 60.4
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.3e-129 466.5 439 64.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 3.9e-129 465.7 431 65.7
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 5.7e-128 461.8 449 63.9
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.8e-127 459.5 438 65.8
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.5e-125 452.6 402 63.4
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.7e-124 450.3 442 63.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 9.4e-123 444.5 447 56.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-118 431.0 438 55.5
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 9.4e-115 417.9 416 63.2
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.2e-108 396.7 438 51.1
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.5e-104 384.0 333 62.8
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-104 383.3 424 53.8
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.3e-95 354.4 290 74.1
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 3.3e-91 339.7 328 66.2
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.6e-91 339.0 438 47.7
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 8.0e-90 335.1 438 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 6.6e-84 315.5 440 44.3
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.5e-80 304.3 442 44.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.0e-80 303.9 287 57.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.2e-79 300.4 325 54.5
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.5e-72 277.7 422 42.9
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 7.1e-70 268.9 337 48.4
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 6.4e-63 245.7 223 56.5
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.9e-62 244.2 223 56.1
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 7.8e-61 238.8 431 46.6
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.4e-56 223.4 333 43.8
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.3e-51 206.8 156 74.4
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 4.5e-48 196.4 542 31.0
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.9e-46 191.0 163 63.2
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.3e-44 184.9 165 57.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 6.7e-44 182.6 246 45.9
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.2e-40 171.8 462 29.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.2e-37 161.8 166 56.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 8.2e-34 149.1 461 30.4
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.3e-31 141.7 111 69.4
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-30 138.3 206 40.8
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.5e-30 136.3 133 57.1
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 7.2e-30 136.0 67 89.6
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 6.1e-29 132.9 128 64.1
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.8e-28 131.3 437 27.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 8.7e-28 129.0 109 66.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.4e-25 120.9 88 67.0
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-24 117.9 178 41.6
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.4e-22 111.7 136 44.1
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 5.5e-22 109.8 133 63.9
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-17 95.5 170 37.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-17 94.4 135 40.0
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 4.1e-17 93.6 93 52.7
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 5.3e-17 93.2 50 78.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.2e-16 92.0 80 65.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.2e-14 84.0 46 89.1
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.6e-13 80.5 43 74.4
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 7.9e-13 79.3 51 76.5
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.9e-12 77.0 46 82.6
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 8.8e-12 75.9 77 51.9
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.3e-11 73.9 36 100.0
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.8e-10 70.9 41 75.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.8e-09 68.2 38 84.2
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.6e-08 64.3 77 45.5


User provided reference genes

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