Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 8.7e-210 733.4 377 100.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.8e-145 518.1 378 72.8
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.1e-140 503.8 378 72.0
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.2e-139 500.4 378 70.1
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.2e-139 500.4 378 68.5
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.8e-139 499.2 378 68.5
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 8.1e-139 497.7 378 70.9
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 4.0e-138 495.4 378 68.0
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.5e-137 493.4 378 67.7
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.7e-136 490.0 378 67.2
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 3.7e-136 488.8 378 69.6
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 2.4e-135 486.1 378 69.0
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 1.5e-132 476.9 379 66.5
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 1.5e-132 476.9 377 67.4
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 1.9e-132 476.5 376 66.2
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 3.3e-132 475.7 379 67.3
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 4.3e-132 475.3 386 67.1
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 4.3e-132 475.3 378 65.3
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 5.6e-132 474.9 378 67.2
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 1.4e-130 470.3 378 67.7
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.5e-129 466.8 379 65.7
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 7.6e-129 464.5 378 64.6
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 9.9e-129 464.2 382 64.9
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 2.9e-128 462.6 378 69.0
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.4e-127 460.3 381 63.3
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 3.2e-127 459.1 379 65.2
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 5.4e-127 458.4 378 64.8
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 5.4e-127 458.4 380 63.9
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 9.2e-127 457.6 379 64.6
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.1e-126 456.4 379 64.6
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.7e-126 456.1 383 64.2
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.6e-126 455.3 378 62.7
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.0e-125 454.1 379 64.6
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 3.3e-124 449.1 378 63.8
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 2.6e-121 439.5 378 62.7
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 3.4e-121 439.1 380 63.7
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 6.4e-120 434.9 379 63.3
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 1.1e-119 434.1 379 61.5
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.4e-119 433.7 383 63.7
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 3.2e-119 432.6 382 61.0
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 4.2e-119 432.2 378 62.2
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 9.3e-119 431.0 378 62.4
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 3.5e-118 429.1 379 62.8
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 7.8e-118 427.9 397 62.0
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.0e-117 427.6 378 61.9
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 1.7e-117 426.8 379 63.1
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 1.5e-116 423.7 377 62.6
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 9.6e-116 421.0 379 60.9
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.6e-115 420.2 379 60.4
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.1e-115 419.9 373 60.3
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 6.2e-115 418.3 378 61.6
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 3.1e-114 416.0 378 61.6
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 2.6e-113 412.9 382 59.2
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 2.6e-113 412.9 382 60.7
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 2.6e-113 412.9 378 61.6
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 5.8e-113 411.8 382 61.0
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 7.6e-113 411.4 382 60.7
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 1.3e-112 410.6 378 61.4
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 3.8e-112 409.1 379 61.2
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 4.2e-111 405.6 379 60.4
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 4.2e-111 405.6 378 60.8
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 6.0e-110 401.7 378 59.3
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 2.5e-108 396.4 377 58.1
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 5.6e-108 395.2 326 62.0
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.8e-107 392.9 377 57.0
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.8e-106 390.2 382 57.9
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 1.2e-105 387.5 380 56.8
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 1.2e-105 387.5 382 57.6
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 2.0e-105 386.7 381 56.2
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 3.4e-105 386.0 400 56.5
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 3.4e-105 386.0 382 55.0
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 5.8e-105 385.2 385 56.9
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 1.4e-103 380.6 390 54.4
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 2.4e-103 379.8 384 54.9
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 3.2e-103 379.4 385 55.3
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 3.2e-103 379.4 381 55.6
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.5e-103 378.6 388 54.9
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.5e-103 378.6 388 54.9
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 2.7e-102 376.3 385 56.1
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 1.0e-101 374.4 385 55.6
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 3.9e-101 372.5 385 55.1
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 1.9e-100 370.2 385 55.1
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 4.3e-100 369.0 382 54.7
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 5.6e-100 368.6 378 54.8
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 8.1e-99 364.8 409 52.1
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 2.4e-98 363.2 378 56.6
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 2.2e-96 356.7 325 59.1
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 4.9e-96 355.5 378 55.6
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.6e-91 340.5 385 48.6
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 8.2e-91 338.2 381 50.7
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.2e-88 330.1 385 46.2
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 1.8e-82 310.5 257 63.4
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 3.1e-82 309.7 283 60.4
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.9e-81 305.4 199 77.9
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.6e-78 297.4 263 58.9
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 5.7e-76 288.9 318 55.0
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.4e-74 284.3 392 43.6
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.1e-66 258.1 226 65.5
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 9.1e-66 255.0 388 41.0
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 7.5e-60 235.3 378 41.3
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 6.1e-54 215.7 169 69.8
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 9.8e-52 208.4 236 50.8
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.7e-51 207.6 169 68.0
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.7e-51 207.6 375 38.7
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 3.7e-51 206.5 178 60.1
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.4e-50 204.5 381 37.5
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.7e-48 197.6 171 64.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 5.0e-48 196.1 166 60.2
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.5e-47 194.5 285 42.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.5e-36 157.9 161 57.8
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.1e-34 151.8 190 44.7
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.1e-34 149.8 190 44.7
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 2.0e-33 147.5 191 44.5
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 2.8e-30 137.1 159 52.8
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.2e-28 131.7 157 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.2e-22 111.7 142 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 8.1e-22 109.0 167 35.9
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 8.3e-19 99.0 82 58.5
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.1e-16 89.7 128 41.4
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 8.6e-16 89.0 92 51.1
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.4e-13 81.6 81 53.1
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 2.3e-13 80.9 70 54.3
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 1.0e-08 65.5 426 24.6
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 6.6e-08 62.8 87 44.8


User provided reference genes

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