Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.1e-215 753.1 376 100.0
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 5.5e-188 661.0 391 86.4
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 4.2e-164 581.6 388 73.5
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 7.2e-164 580.9 383 74.4
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.0e-163 577.4 378 75.1
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.0e-162 577.0 378 73.8
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.8e-162 576.2 377 74.8
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.2e-162 574.7 378 74.9
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 8.8e-162 573.9 371 75.5
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.5e-161 573.2 386 72.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.7e-160 569.7 381 72.4
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.1e-159 567.0 383 72.8
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.1e-159 567.0 368 75.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 5.4e-159 564.7 379 73.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.6e-158 563.1 371 72.5
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 2.7e-158 562.4 376 73.7
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 5.9e-158 561.2 370 73.8
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 7.7e-158 560.8 376 71.5
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 1.0e-157 560.5 378 72.2
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.7e-157 559.7 376 72.9
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 2.2e-157 559.3 375 72.3
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.2e-157 559.3 376 72.9
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 2.9e-157 558.9 391 70.1
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.9e-157 558.9 363 73.8
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.1e-156 557.0 366 73.0
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.1e-156 557.0 414 68.4
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.9e-156 556.2 400 70.2
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.9e-156 556.2 380 71.3
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 4.2e-156 555.1 379 71.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 4.2e-156 555.1 380 71.1
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 9.4e-156 553.9 383 72.1
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 9.4e-156 553.9 400 69.8
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 9.4e-156 553.9 400 70.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.1e-155 552.7 380 70.5
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 3.6e-155 552.0 371 72.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 4.7e-155 551.6 384 70.6
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 8.0e-155 550.8 380 70.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.4e-154 550.1 376 70.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.4e-154 550.1 378 70.9
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.4e-154 550.1 378 70.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.4e-154 550.1 369 72.4
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.8e-154 549.7 363 71.3
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 5.2e-154 548.1 363 70.8
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 5.2e-154 548.1 374 71.1
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.5e-153 546.6 420 66.7
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 4.4e-153 545.0 390 69.2
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 5.7e-153 544.7 363 70.0
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 5.7e-153 544.7 380 70.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 7.5e-153 544.3 363 70.5
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 7.5e-153 544.3 363 70.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 7.5e-153 544.3 386 67.6
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.3e-152 543.5 363 70.5
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.7e-152 543.1 374 71.4
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.2e-152 542.7 380 69.7
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.2e-152 542.7 370 71.1
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 8.3e-152 540.8 363 70.2
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 3.1e-151 538.9 401 67.1
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 4.1e-151 538.5 383 68.9
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 5.4e-151 538.1 364 69.8
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 5.4e-151 538.1 363 70.0
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 5.4e-151 538.1 384 68.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 9.1e-151 537.3 391 68.0
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.2e-150 537.0 376 69.4
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 2.3e-149 532.7 368 70.1
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.9e-149 532.3 376 69.9
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 8.6e-149 530.8 394 66.8
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.1e-148 530.4 382 67.0
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.5e-148 530.0 375 68.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.9e-148 529.6 377 67.1
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.2e-148 528.5 384 66.7
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 5.5e-148 528.1 382 67.0
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 7.2e-148 527.7 394 66.2
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 7.2e-148 527.7 384 66.9
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 2.8e-147 525.8 385 67.5
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 4.7e-147 525.0 417 64.3
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.4e-146 523.5 370 68.4
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.0e-146 522.3 373 67.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 8.9e-146 520.8 364 68.1
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 8.9e-146 520.8 346 72.0
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 6.3e-144 514.6 376 67.6
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.1e-143 513.8 370 67.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.1e-143 511.9 378 66.9
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 5.4e-143 511.5 364 67.0
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.9e-142 508.1 363 67.5
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.3e-141 506.1 370 66.5
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.9e-140 503.1 397 63.2
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.5e-140 502.7 376 65.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 6.1e-139 498.0 355 69.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 3.2e-135 485.7 378 63.5
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.1e-132 477.2 303 72.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.9e-132 476.5 469 53.5
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.2e-131 473.8 302 72.8
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.2e-129 467.2 383 61.6
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.2e-129 467.2 387 61.2
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.6e-129 466.1 356 72.8
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 7.5e-129 464.5 370 62.4
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 4.9e-128 461.8 391 61.1
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 7.8e-126 454.5 375 59.7
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 3.1e-122 442.6 286 72.4
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 5.8e-121 438.3 372 58.6
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.2e-120 436.4 365 59.7
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.9e-120 435.3 365 59.7
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.9e-112 409.5 389 55.3
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.6e-110 402.1 335 58.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.8e-107 392.1 357 54.1
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.9e-100 370.2 199 85.9
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.8e-99 365.5 252 67.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.3e-93 347.4 283 55.5
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.1e-92 344.4 196 79.6
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.3e-85 320.9 244 63.1
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.5e-81 307.4 221 66.1
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.0e-64 251.5 304 44.1
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-59 234.6 204 52.0
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 4.8e-59 232.6 339 38.9
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.2e-59 231.9 204 52.0
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-58 230.3 204 51.0
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.1e-58 229.9 204 52.0
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-45 188.0 188 51.6
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 1.0e-37 161.8 141 60.3
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.2e-25 121.7 77 64.9
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 2.7e-17 94.0 97 60.8
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.2e-14 82.8 307 23.5
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.8e-13 81.3 267 25.8
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 3.1e-13 80.5 88 58.0
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 7.5e-12 75.9 270 23.3
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.2e-11 74.3 275 23.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.9e-11 73.9 265 24.2
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 3.7e-11 73.6 265 22.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 4.9e-11 73.2 270 23.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.4e-10 71.6 287 22.6
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.4e-10 71.6 287 22.6
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.4e-10 71.6 311 20.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.4e-10 71.6 309 20.7
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.9e-10 71.2 243 23.9
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.4e-10 70.9 272 24.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.2e-10 70.5 290 23.1
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.4e-10 69.7 257 23.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 7.1e-10 69.3 314 22.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 9.2e-10 68.9 273 24.2
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 9.2e-10 68.9 326 22.4
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 1.2e-09 68.6 162 24.7
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.7e-09 67.4 302 22.5
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.7e-09 67.4 273 24.2
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.7e-09 67.4 182 24.7
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.7e-09 67.4 313 22.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 6.0e-09 66.2 182 23.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.7e-08 64.7 181 24.3
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 2.3e-08 64.3 162 22.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.3e-08 64.3 162 22.8
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.9e-08 63.5 134 24.6
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 6.6e-08 62.8 160 23.1
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.5e-07 61.6 188 22.3


User provided reference genes

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