Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 8.0e-154 547.0 260 100.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.0e-116 422.2 264 74.2
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 7.3e-115 417.5 263 74.5
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.2e-109 400.2 263 71.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 3.9e-100 368.6 261 65.9
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 9.6e-99 364.0 262 64.9
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.8e-97 359.8 260 65.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.5e-96 355.1 263 63.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.9e-95 351.7 260 62.7
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.2e-94 348.6 264 63.3
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 6.0e-93 344.7 253 64.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.8e-92 343.2 253 65.6
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.9e-92 342.0 266 59.8
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.5e-91 339.3 265 61.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.6e-90 336.7 252 61.9
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.6e-90 336.7 252 63.1
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.8e-90 335.1 265 60.4
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 6.2e-90 334.7 266 59.0
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.3e-89 331.6 265 60.8
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.9e-89 331.3 263 59.7
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.2e-88 330.5 265 59.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 5.8e-88 328.2 253 60.1
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.6e-88 327.8 266 58.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 9.9e-88 327.4 260 58.8
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.3e-87 327.0 268 59.3
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.3e-87 327.0 265 57.7
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.9e-87 325.1 265 58.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.9e-87 325.1 264 60.2
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.4e-86 323.6 268 57.5
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.4e-86 323.6 268 57.8
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.2e-86 322.0 267 57.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 5.5e-86 321.6 268 58.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-85 320.5 265 57.4
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.7e-85 319.3 258 60.5
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.8e-84 316.6 259 56.8
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.3e-84 316.2 269 58.0
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 3.0e-84 315.8 264 56.4
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.7e-84 314.7 247 59.5
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.8e-82 308.5 229 62.4
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.8e-82 308.5 249 58.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 6.2e-82 308.1 222 65.3
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.4e-81 307.0 262 56.5
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.4e-81 306.2 199 71.9
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.1e-81 305.8 267 57.7
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 3.1e-81 305.8 252 57.5
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.0e-81 305.4 267 58.1
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.9e-81 304.7 265 58.5
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 6.9e-81 304.7 249 58.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.6e-80 302.8 260 56.2
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.6e-80 302.8 262 54.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-80 302.8 266 53.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.5e-80 302.0 265 57.4
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.2e-79 299.7 252 56.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.2e-79 299.7 192 71.9
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.5e-78 296.2 268 56.7
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.7e-77 292.7 268 55.2
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.3e-76 289.7 246 55.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.3e-76 289.7 261 53.3
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 3.0e-76 289.3 269 52.4
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.1e-75 287.3 219 61.6
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.5e-75 287.0 268 53.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.9e-75 286.6 270 53.7
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.3e-75 285.8 249 57.8
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 4.3e-75 285.4 238 53.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.4e-75 284.6 268 53.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 7.4e-75 284.6 266 54.1
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.7e-74 282.3 251 54.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 4.8e-74 282.0 267 54.7
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.2e-74 281.2 254 52.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.4e-73 280.4 266 51.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.4e-73 280.4 253 57.3
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.4e-73 279.6 266 52.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.0e-72 276.6 275 52.0
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.7e-71 273.5 255 53.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.7e-71 273.5 263 52.5
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.9e-71 272.7 238 54.2
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.9e-71 272.7 211 60.2
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.8e-71 272.3 270 48.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 5.0e-71 271.9 255 52.9
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 4.2e-70 268.9 267 50.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.5e-70 268.5 261 49.8
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.2e-69 267.3 261 49.8
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.1e-69 266.5 243 54.3
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.6e-69 265.8 261 51.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 6.1e-69 265.0 263 50.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-68 264.2 263 53.2
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.0e-68 264.2 245 52.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.0e-68 262.7 264 48.9
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 3.0e-68 262.7 263 52.5
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 3.0e-68 262.7 263 52.5
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 3.0e-68 262.7 261 47.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 3.9e-68 262.3 263 48.7
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.9e-68 262.3 265 50.2
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 6.7e-68 261.5 244 51.6
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 6.7e-68 261.5 259 51.0
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 2.5e-67 259.6 257 49.4
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.3e-67 259.2 261 50.6
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.3e-67 259.2 261 50.6
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.3e-67 259.2 261 50.6
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.3e-67 259.2 226 52.7
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 4.3e-67 258.8 268 48.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 5.7e-67 258.5 263 51.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 5.7e-67 258.5 263 51.3
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 9.7e-67 257.7 268 50.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-66 257.3 208 57.2
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.2e-66 256.5 274 50.4
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 8.2e-66 254.6 282 47.2
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.1e-65 254.2 258 50.0
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.4e-65 253.8 273 50.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.4e-65 253.8 201 56.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 2.4e-65 253.1 237 52.3
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 4.1e-65 252.3 251 49.0
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.7e-63 246.9 265 47.9
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.9e-63 246.1 285 43.9
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.9e-63 246.1 251 50.2
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.8e-63 245.7 239 49.8
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 5.0e-63 245.4 230 50.9
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 8.5e-63 244.6 158 70.9
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 8.5e-63 244.6 211 54.0
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-62 243.8 235 53.6
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 7.2e-62 241.5 306 44.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 2.7e-61 239.6 266 48.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.6e-61 239.2 246 51.6
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.6e-61 238.8 263 47.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.0e-60 237.7 286 44.4
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.4e-60 237.3 207 53.1
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.8e-60 236.9 232 49.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.3e-60 236.5 238 48.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.0e-60 236.1 246 51.2
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 5.1e-60 235.3 312 42.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.7e-60 235.0 217 53.0
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 7.4e-59 231.5 214 52.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-58 230.3 218 50.5
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.8e-58 229.6 209 53.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.7e-58 229.2 286 43.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.3e-58 228.4 209 51.2
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.3e-58 228.4 238 47.9
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.8e-57 226.9 266 45.1
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.4e-57 226.5 271 43.9
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 4.1e-57 225.7 255 46.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.9e-55 219.5 179 58.7
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.2e-54 216.1 260 45.0
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.2e-54 215.7 179 56.4
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.1e-53 213.4 167 56.9
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 8.2e-50 201.4 283 40.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-47 194.5 183 53.0
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 4.2e-46 189.1 263 39.2
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.6e-45 187.2 152 61.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.1e-45 186.8 179 56.4
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.1e-45 186.8 234 45.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.0e-44 184.5 261 41.4
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 5.2e-44 182.2 218 44.0
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 8.8e-44 181.4 246 40.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-43 180.6 219 47.5
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 8.2e-42 174.9 165 52.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.7e-40 169.9 125 60.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.6e-37 159.5 218 36.7
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.2e-36 155.6 237 38.8
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 5.2e-36 155.6 302 29.8
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.2e-35 154.5 146 53.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.8e-34 149.1 240 38.8
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 6.3e-34 148.7 318 28.3
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 4.5e-32 142.5 165 48.5
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.9e-30 137.1 223 33.6
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-29 134.4 260 35.0
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.6e-29 134.0 85 68.2
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.9e-28 128.3 191 40.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.2e-27 127.9 260 33.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.8e-25 120.6 132 47.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.4e-25 120.2 261 32.2
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-24 117.9 81 65.4
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.0e-23 114.8 77 61.0
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.1e-21 105.5 87 58.6
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.7e-18 97.4 144 41.7
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.1e-17 94.7 105 46.7
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.6e-16 90.9 130 43.8
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.0e-15 88.2 47 80.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-15 87.0 106 43.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.6e-15 85.5 152 35.5
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-14 81.6 164 32.3
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.4e-12 77.8 74 54.1
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 3.7e-10 69.7 43 67.4
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.4e-10 68.9 45 66.7
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.3e-07 61.2 59 54.2
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.3e-07 60.5 66 48.5
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.5e-06 57.8 61 49.2


User provided reference genes

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