Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 9.6e-203 709.9 352 100.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.7e-154 549.7 334 81.1
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.5e-152 542.0 334 80.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.7e-151 539.7 325 81.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.6e-151 537.7 325 81.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-150 536.6 324 79.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 7.2e-150 534.3 323 80.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.7e-149 531.6 322 80.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.1e-149 531.2 329 78.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.0e-148 528.5 352 76.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.2e-148 528.1 323 78.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 5.2e-148 528.1 325 80.0
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.2e-148 528.1 322 80.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.9e-148 527.3 337 79.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.9e-148 527.3 336 77.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.9e-148 527.3 331 77.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.2e-147 526.9 330 76.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.4e-147 525.0 342 76.3
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 9.8e-147 523.9 330 78.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.7e-146 523.1 324 79.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.7e-146 523.1 327 77.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.9e-146 522.3 322 78.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.7e-146 521.9 322 78.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-146 521.9 335 77.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.9e-146 521.5 329 77.8
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 6.4e-146 521.2 334 76.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.4e-146 521.2 322 79.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.4e-146 521.2 333 78.4
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-145 520.4 348 75.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.4e-145 519.2 322 79.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.2e-145 518.8 334 75.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.2e-145 518.8 325 77.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.1e-145 518.5 325 79.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.1e-145 518.5 348 75.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.4e-145 518.1 332 76.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.0e-145 517.7 322 79.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 9.2e-145 517.3 332 77.7
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.2e-145 517.3 332 77.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.7e-144 515.8 322 79.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.5e-144 515.4 349 73.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.0e-143 513.8 325 78.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-143 513.5 317 81.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.3e-143 512.7 338 74.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.9e-143 512.3 330 77.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.9e-143 512.3 330 77.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.9e-143 512.3 324 76.5
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.9e-143 511.9 322 77.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.6e-143 511.1 321 81.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.6e-143 511.1 330 77.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 6.6e-143 511.1 322 77.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-142 510.4 344 75.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-142 510.0 326 79.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.5e-142 509.2 337 75.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 5.6e-142 508.1 342 75.4
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 9.5e-142 507.3 344 73.3
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-141 506.9 326 74.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-141 506.5 339 74.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.6e-141 505.4 332 76.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.0e-140 503.8 363 71.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.0e-140 503.8 331 74.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.2e-140 501.5 333 74.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.8e-140 501.1 312 78.5
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.9e-140 500.7 335 74.3
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.2e-139 500.4 334 74.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.5e-139 500.0 322 75.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.0e-139 499.6 329 73.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.0e-139 499.6 330 74.5
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.6e-139 499.2 344 72.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 7.5e-139 497.7 336 73.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.5e-139 497.7 337 73.9
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.5e-139 497.7 333 73.6
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 7.5e-139 497.7 318 75.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 7.5e-139 497.7 328 74.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-138 496.9 341 73.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-138 496.5 331 74.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.2e-138 496.1 324 74.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.7e-138 495.4 336 72.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.9e-138 495.0 326 73.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.3e-138 494.2 337 73.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-137 493.8 345 71.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.4e-137 493.4 330 74.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.9e-137 493.0 333 72.4
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.9e-137 493.0 341 71.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.4e-137 491.5 304 79.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 5.4e-137 491.5 328 72.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 9.2e-137 490.7 323 73.1
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 348 69.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.6e-136 490.0 333 72.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-136 490.0 370 70.0
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.0e-136 489.6 330 73.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.7e-136 489.2 306 79.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.5e-136 488.8 328 73.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.5e-136 488.8 344 72.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.8e-136 487.6 323 76.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-135 487.3 318 73.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.7e-135 486.5 336 72.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.0e-135 485.7 330 73.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.9e-135 485.3 315 76.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-135 484.6 334 71.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-134 483.8 328 73.8
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.1e-134 483.8 364 66.8
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.5e-134 482.6 321 76.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-134 481.9 321 73.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 5.6e-134 481.5 335 70.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 9.5e-134 480.7 335 70.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.6e-133 479.9 336 70.5
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.7e-133 478.4 376 65.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.1e-132 477.2 336 70.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.4e-132 476.9 336 70.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.8e-132 476.5 399 62.7
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 5.2e-132 474.9 336 69.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.8e-131 471.5 342 69.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-130 470.3 341 70.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.3e-130 470.3 335 68.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.7e-130 469.9 325 70.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.1e-129 464.5 324 69.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-128 463.8 313 74.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.6e-128 463.4 348 68.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 5.6e-126 454.9 323 70.6
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.1e-125 453.0 331 68.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-124 450.7 338 68.6
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 7.6e-123 444.5 264 81.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.3e-122 443.7 536 48.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.9e-122 441.8 322 68.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.4e-121 439.5 322 68.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.2e-114 416.4 300 67.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.2e-113 412.5 329 63.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.0e-111 407.5 265 76.2
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-109 400.6 264 75.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-109 400.2 281 73.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-108 396.4 336 63.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.2e-98 363.2 314 58.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.2e-97 359.4 323 56.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.3e-95 353.2 231 75.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-94 350.1 282 67.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 9.6e-94 347.8 206 83.5
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.9e-90 336.3 202 82.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-89 334.0 204 80.9
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.6e-88 330.5 209 75.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.5e-88 329.3 288 56.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.3e-86 322.8 213 75.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 5.7e-86 322.0 346 54.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.9e-71 272.7 163 81.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.3e-68 262.3 173 76.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.9e-67 258.8 161 78.3
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.7e-66 257.3 371 41.2
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-64 250.8 171 71.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.7e-61 240.7 213 61.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.2e-59 234.6 171 70.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.1e-57 228.0 161 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.8e-50 203.0 252 46.4
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 8.0e-48 195.3 332 38.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.1e-44 183.0 122 73.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 5.4e-44 182.6 202 50.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-40 170.2 111 74.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-31 141.7 289 35.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.9e-29 133.7 402 30.8
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-28 131.7 109 58.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.2e-28 130.2 251 34.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.1e-25 121.7 71 83.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.5e-22 109.0 207 34.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.5e-19 100.1 91 59.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-18 98.2 64 73.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.7e-18 97.8 64 70.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.3e-17 93.2 57 75.4
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.1e-16 89.0 56 76.8
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.1e-10 69.7 61 57.4
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.7e-08 63.2 108 32.4


User provided reference genes

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