Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A23G68 Lonicera japonica HOM05D000010 ORTHO05D000063 7.1e-209 730.3 361 100.0
Dinv36367 Davidia involucrata HOM05D000010 ORTHO05D000063 2.1e-104 383.3 357 59.1
Lj3A936G54 Lonicera japonica HOM05D000010 ORTHO05D000063 7.8e-99 364.8 392 53.1
CSS0030755 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.1e-95 352.8 355 53.8
CSS0029840 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 7.6e-94 348.2 358 53.4
Hma1.2p1_0117F.1_g056430 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 3.3e-89 332.8 355 52.4
Hma1.2p1_2971F.1_g331090 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 9.6e-89 331.3 373 50.1
Actinidia06727 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.3e-82 310.1 359 47.4
Cc02_g10630 Coffea canephora HOM05D000010 ORTHO05D000063 3.9e-82 309.3 388 46.1
GSVIVG01016175001 Vitis vinifera HOM05D000010 ORTHO05D000063 9.0e-79 298.1 354 48.3
MSTRG.27500 Avicennia marina HOM05D000010 ORTHO05D000063 2.1e-75 287.0 363 46.3
Manes.10G052500 Manihot esculenta HOM05D000010 ORTHO05D000063 2.7e-75 286.6 359 45.7
Potri.008G031800 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.3e-74 284.3 356 48.0
vmacro07196 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 6.7e-74 282.0 357 46.2
Actinidia18551 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.5e-73 280.0 354 44.9
Oeu015066.2 Olea europaea HOM05D000010 ORTHO05D000063 2.1e-72 276.9 330 46.1
Rhsim09G0145800 Rhododendron simsii HOM05D000010 ORTHO05D000063 8.1e-72 275.0 369 43.1
Sabra08G0020800 Salix brachista HOM05D000010 ORTHO05D000063 1.5e-70 270.8 382 44.0
Potri.010G229900 Populus trichocarpa HOM05D000010 ORTHO05D000063 3.4e-70 269.6 355 46.5
Sabra10G0178400 Salix brachista HOM05D000010 ORTHO05D000063 1.3e-69 267.7 357 45.7
Oeu046651.1 Olea europaea HOM05D000010 ORTHO05D000063 6.4e-69 265.4 379 42.5
SalBow4G1529 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.2e-68 263.1 362 40.6
vmacro10258 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 5.5e-68 262.3 345 42.6
Dinv31252 Davidia involucrata HOM05D000010 ORTHO05D000063 6.0e-67 258.8 220 60.5
Nitab4.5_0001461g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 2.3e-66 256.9 364 46.2
Rhsim03G0112000 Rhododendron simsii HOM05D000010 ORTHO05D000063 2.3e-66 256.9 295 49.2
Prupe.2G091500 Prunus persica HOM05D000010 ORTHO05D000063 3.0e-66 256.5 380 41.1
QL08p053177 Quercus lobata HOM05D000010 ORTHO05D000063 5.1e-66 255.8 376 42.0
Haze_16769 Corylus avellana HOM05D000010 ORTHO05D000063 8.7e-66 255.0 343 45.2
Nitab4.5_0002717g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 8.7e-66 255.0 363 44.9
Peaxi162Scf00253g00321 Petunia axillaris HOM05D000010 ORTHO05D000063 4.3e-65 252.7 363 42.7
Oeu035818.1 Olea europaea HOM05D000010 ORTHO05D000063 5.6e-65 252.3 342 43.3
PGSC0003DMG402023373 Solanum tuberosum HOM05D000010 ORTHO05D000063 5.6e-65 252.3 362 44.8
SGA_v2.0_scaffold13G06511 Striga asiatica HOM05D000010 ORTHO05D000063 5.6e-65 252.3 364 43.4
Nitab4.5_0000096g0240 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.4e-65 251.9 362 44.8
Nitab4.5_0002692g0070 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.4e-65 251.9 362 44.8
Sopen05g033920 Solanum pennellii HOM05D000010 ORTHO05D000063 9.6e-65 251.5 359 44.3
Solyc05g055470.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 1.6e-64 250.8 359 43.7
CAN.G1891.2 Capsicum annuum HOM05D000010 ORTHO05D000063 2.1e-64 250.4 358 45.0
Ciclev10031147m.g Citrus clementina HOM05D000010 ORTHO05D000063 2.8e-64 250.0 356 42.1
FAN03G0942 Fragaria x ananassa HOM05D000010 ORTHO05D000063 6.2e-64 248.8 386 41.2
FAN10G1055 Fragaria x ananassa HOM05D000010 ORTHO05D000063 6.2e-64 248.8 386 41.2
MSTRG.9134 Avicennia marina HOM05D000010 ORTHO05D000063 1.4e-63 247.7 385 40.0
PGSC0003DMG400031071 Solanum tuberosum HOM05D000010 ORTHO05D000063 6.9e-63 245.4 358 44.1
FvH4_7g06501 Fragaria vesca HOM05D000010 ORTHO05D000063 1.5e-62 244.2 387 41.1
RcHm_v2.0_Chr1g0334901 Rosa chinensis HOM05D000010 ORTHO05D000063 1.5e-62 244.2 385 41.6
FAN01G1123 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.5e-62 242.7 389 41.1
Migut.F01913 Erythranthe guttata HOM05D000010 ORTHO05D000063 7.6e-62 241.9 368 42.1
FAN06G3423 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.0e-61 241.5 389 41.1
Peaxi162Scf00176g01638 Petunia axillaris HOM05D000010 ORTHO05D000063 2.9e-61 240.0 331 43.8
Actinidia38886 Actinidia chinensis HOM05D000010 ORTHO05D000063 6.5e-61 238.8 355 41.7
DCAR_006394 Daucus carota HOM05D000010 ORTHO05D000063 1.4e-60 237.7 404 39.9
MD07G1073200 Malus domestica HOM05D000010 ORTHO05D000063 4.2e-60 236.1 393 38.2
Peaxi162Scf01105g00218 Petunia axillaris HOM05D000010 ORTHO05D000063 4.2e-60 236.1 356 43.5
CAN.G459.17 Capsicum annuum HOM05D000010 ORTHO05D000063 4.6e-59 232.6 348 44.0
Solyc11g008000.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 4.6e-59 232.6 358 43.3
Sopen11g003860 Solanum pennellii HOM05D000010 ORTHO05D000063 1.8e-58 230.7 358 43.0
Lsat_1_v5_gn_2_103381 Lactuca sativa HOM05D000010 ORTHO05D000063 3.3e-57 226.5 375 40.0
Sc09g0005870 Simmondsia chinensis HOM05D000010 ORTHO05D000063 7.4e-57 225.3 345 40.6
ECA238G1989 Erigeron canadensis HOM05D000010 ORTHO05D000063 2.1e-56 223.8 405 36.3
Thecc.10G088800 Theobroma cacao HOM05D000010 ORTHO05D000063 2.1e-56 223.8 384 38.5
DCAR_019077 Daucus carota HOM05D000010 ORTHO05D000063 4.8e-56 222.6 354 38.7
CiPaw.01G265900 Carya illinoinensis HOM05D000010 ORTHO05D000063 6.3e-56 222.2 347 39.5
Actinidia34793 Actinidia chinensis HOM05D000010 ORTHO05D000063 9.0e-55 218.4 356 40.4
MD02G1243600 Malus domestica HOM05D000010 ORTHO05D000063 1.2e-54 218.0 317 42.9
Eucgr.J01038 Eucalyptus grandis HOM05D000010 ORTHO05D000063 1.0e-53 214.9 343 39.4
ECA233G3937 Erigeron canadensis HOM05D000010 ORTHO05D000063 9.3e-52 208.4 359 38.4
CANSAT56G2413 Cannabis sativa HOM05D000010 ORTHO05D000063 1.2e-51 208.0 293 42.7
MELO3C012390.2 Cucumis melo HOM05D000010 ORTHO05D000063 2.7e-51 206.8 358 39.4
HanXRQChr14g0455811 Helianthus annuus HOM05D000010 ORTHO05D000063 2.7e-51 206.8 369 35.8
ClCG05G021380 Citrullus lanatus HOM05D000010 ORTHO05D000063 2.3e-50 203.8 360 39.7
ClCG08G007900 Citrullus lanatus HOM05D000010 ORTHO05D000063 3.0e-50 203.4 356 39.0
CsaV3_5G035860 Cucumis sativus L. HOM05D000010 ORTHO05D000063 5.1e-50 202.6 359 39.3
Gorai.009G309000 Gossypium raimondii HOM05D000010 ORTHO05D000063 5.1e-50 202.6 384 38.0
TAR623G1651 Trochodendron aralioides HOM05D000010 ORTHO05D000063 6.7e-50 202.2 370 38.6
COL.COLO4_32899 Corchorus olitorius HOM05D000010 ORTHO05D000063 1.6e-48 197.6 394 34.8
TAR633G0974 Trochodendron aralioides HOM05D000010 ORTHO05D000063 3.7e-48 196.4 361 39.1
Gohir.A05G291500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 6.3e-48 195.7 384 37.0
CiPaw.02G170400 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.4e-47 194.5 348 38.2
Duzib114G1006 Durio zibethinus HOM05D000010 ORTHO05D000063 1.4e-47 194.5 383 37.3
Sed0027652 Sechium edule HOM05D000010 ORTHO05D000063 1.4e-47 194.5 363 38.3
Duzib106G0231 Durio zibethinus HOM05D000010 ORTHO05D000063 1.8e-47 194.1 383 36.6
Migut.F01687 Erythranthe guttata HOM05D000010 ORTHO05D000063 1.2e-46 191.4 361 36.8
SGA_v2.0_scaffold62G21368 Striga asiatica HOM05D000010 ORTHO05D000063 2.0e-46 190.7 307 40.4
TWI38G2043 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.6e-46 190.3 350 36.9
Gohir.D05G292600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.4e-46 189.9 384 36.5
TWI63G0521 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.0e-45 188.3 349 38.1
Duzib114G0615 Durio zibethinus HOM05D000010 ORTHO05D000063 6.5e-45 185.7 382 36.4
Lsat_1_v5_gn_8_17440 Lactuca sativa HOM05D000010 ORTHO05D000063 6.5e-45 185.7 357 36.1
HanXRQChr08g0218221 Helianthus annuus HOM05D000010 ORTHO05D000063 8.5e-45 185.3 358 37.2
MD02G1243200 Malus domestica HOM05D000010 ORTHO05D000063 1.1e-44 184.9 310 40.0
MELO3C019845.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.4e-44 184.5 306 41.2
PGR044G1763 Punica granatum HOM05D000010 ORTHO05D000063 2.1e-43 180.6 359 34.8
SalBow6G5410 Salvia bowleyana HOM05D000010 ORTHO05D000063 4.6e-43 179.5 363 36.6
Sed0016699 Sechium edule HOM05D000010 ORTHO05D000063 2.3e-42 177.2 362 35.4
HanXRQChr11g0336031 Helianthus annuus HOM05D000010 ORTHO05D000063 3.0e-42 176.8 384 33.6
EL10Ac4g08623 Beta vulgaris HOM05D000010 ORTHO05D000063 6.7e-42 175.6 351 38.5
CsaV3_2G021020 Cucumis sativus L. HOM05D000010 ORTHO05D000063 8.8e-42 175.3 358 36.6
THA.LOC104823200 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.2e-40 170.6 379 34.0
THA.LOC104816444 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.8e-40 170.2 366 34.7
Sed0015483 Sechium edule HOM05D000010 ORTHO05D000063 1.4e-39 167.9 295 37.6
Thhalv10013110m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 2.6e-38 163.7 340 34.4
AUR62041539 Chenopodium quinoa HOM05D000010 ORTHO05D000063 4.5e-38 162.9 350 36.0
TWI15G0874 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 7.7e-38 162.2 352 36.1
AUR62041525 Chenopodium quinoa HOM05D000010 ORTHO05D000063 8.5e-37 158.7 350 35.4
TPR.G37833 Trifolium pratense HOM05D000010 ORTHO05D000063 9.4e-36 155.2 358 32.7
AL3G21890 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.9e-34 149.8 380 33.7
Sed0026098 Sechium edule HOM05D000010 ORTHO05D000063 3.3e-33 146.7 310 36.5
Sp6g38330 Schrenkiella parvula HOM05D000010 ORTHO05D000063 4.4e-33 146.4 336 33.0
PGR142G0341 Punica granatum HOM05D000010 ORTHO05D000063 1.7e-32 144.4 340 32.6
CARHR085010 Cardamine hirsuta HOM05D000010 ORTHO05D000063 2.2e-32 144.1 375 32.0
Carub.0006s0335 Capsella rubella HOM05D000010 ORTHO05D000063 4.8e-32 142.9 274 37.2
Oeu053360.1 Olea europaea HOM05D000010 ORTHO05D000063 1.1e-31 141.7 200 41.0
BraA10t45214Z Brassica rapa HOM05D000010 ORTHO05D000063 2.4e-31 140.6 346 30.9
Lalb_Chr06g0169951 Lupinus albus HOM05D000010 ORTHO05D000063 2.4e-31 140.6 363 32.5
Phvul.007G140500 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 2.4e-31 140.6 345 33.3
Carub.0003s0974 Capsella rubella HOM05D000010 ORTHO05D000063 3.1e-31 140.2 376 30.9
BcaB01g05896 Brassica carinata HOM05D000010 ORTHO05D000063 4.1e-31 139.8 372 30.4
C03p02030 Brassica napus HOM05D000010 ORTHO05D000063 4.1e-31 139.8 372 30.4
Ca_10449_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 1.2e-30 138.3 365 29.9
Nn2g13861 Nelumbo nucifera HOM05D000010 ORTHO05D000063 1.2e-30 138.3 354 30.8
Atru.chr12.893 Acer truncatum HOM05D000010 ORTHO05D000063 3.5e-30 136.7 184 42.4
BcaC06g32150 Brassica carinata HOM05D000010 ORTHO05D000063 3.5e-30 136.7 354 31.6
A10p31670 Brassica napus HOM05D000010 ORTHO05D000063 3.5e-30 136.7 346 30.3
Sp3g08760 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.5e-30 136.7 341 30.8
Thhalv10020438m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 7.7e-30 135.6 375 29.9
BolC3t12756H Brassica oleracea HOM05D000010 ORTHO05D000063 1.3e-29 134.8 375 29.9
AT3G10500 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 2.2e-29 134.0 374 32.6
Hund06760 Selenicereus undatus HOM05D000010 ORTHO05D000063 2.9e-29 133.7 333 34.5
AL6G14030 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.8e-29 133.3 301 32.6
AT5G04410 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 6.5e-29 132.5 302 33.1
Lalb_Chr21g0313001 Lupinus albus HOM05D000010 ORTHO05D000063 2.5e-28 130.6 354 31.4
Glyma.20G192300 Glycine max HOM05D000010 ORTHO05D000063 5.5e-28 129.4 358 33.8
VMungo0720G0825 Vigna mungo HOM05D000010 ORTHO05D000063 9.4e-28 128.6 348 32.5
Psat6g173000 Pisum sativum HOM05D000010 ORTHO05D000063 1.2e-27 128.3 310 33.5
C09p72340 Brassica napus HOM05D000010 ORTHO05D000063 2.7e-27 127.1 342 31.0
Aa31LG3G3340 Aethionema arabicum HOM05D000010 ORTHO05D000063 3.6e-27 126.7 373 30.8
BcaNung04623 Brassica carinata HOM05D000010 ORTHO05D000063 3.6e-27 126.7 313 32.9
CARHR208900 Cardamine hirsuta HOM05D000010 ORTHO05D000063 3.6e-27 126.7 341 31.1
BolC9t59978H Brassica oleracea HOM05D000010 ORTHO05D000063 1.8e-26 124.4 339 29.8
TAR636G1511 Trochodendron aralioides HOM05D000010 ORTHO05D000063 4.0e-26 123.2 217 39.2
Psat0s972g0040 Pisum sativum HOM05D000010 ORTHO05D000063 1.5e-25 121.3 360 30.8
PSO063G6455 Papaver somniferum HOM05D000010 ORTHO05D000063 2.0e-25 120.9 357 31.9
A03p01660 Brassica napus HOM05D000010 ORTHO05D000063 7.5e-25 119.0 271 35.4
BraA03t09541Z Brassica rapa HOM05D000010 ORTHO05D000063 7.5e-25 119.0 275 35.3
Glyma.10G197600 Glycine max HOM05D000010 ORTHO05D000063 7.5e-25 119.0 359 32.0
unitig_37.g12324 Utricularia gibba HOM05D000010 ORTHO05D000063 9.7e-25 118.6 359 29.8
Ah.04g154160 Amaranthus hybridus HOM05D000010 ORTHO05D000063 6.3e-24 115.9 352 31.8
Ah.06g194120 Amaranthus hybridus HOM05D000010 ORTHO05D000063 6.3e-24 115.9 344 32.3
BcaB05g21763 Brassica carinata HOM05D000010 ORTHO05D000063 1.1e-23 115.2 271 34.3
MBI17_g35900_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 7.0e-23 112.5 252 32.5
Lj5g0011538 Lotus japonicus HOM05D000010 ORTHO05D000063 2.7e-22 110.5 356 30.6
Cpa.g.sc706.6 Carica papaya HOM05D000010 ORTHO05D000063 1.3e-21 108.2 109 50.5
Medtr0036s0150 Medicago truncatula HOM05D000010 ORTHO05D000063 3.8e-21 106.7 361 29.4
PSO339G4638 Papaver somniferum HOM05D000010 ORTHO05D000063 4.2e-20 103.2 360 30.0
Medtr1g090723 Medicago truncatula HOM05D000010 ORTHO05D000063 1.6e-19 101.3 245 32.2
arahy.Tifrunner.gnm1.ann1.ILS8DP Arachis hypogaea HOM05D000010 ORTHO05D000063 9.8e-17 92.0 401 26.4
A01p41730 Brassica napus HOM05D000010 ORTHO05D000063 1.3e-16 91.7 366 26.8
BraA01t04248Z Brassica rapa HOM05D000010 ORTHO05D000063 1.3e-16 91.7 366 26.8
C02p01920 Brassica napus HOM05D000010 ORTHO05D000063 1.7e-16 91.3 270 28.5
BolC2t06149H Brassica oleracea HOM05D000010 ORTHO05D000063 1.7e-16 91.3 270 28.5
BcaC03g12944 Brassica carinata HOM05D000010 ORTHO05D000063 2.2e-16 90.9 270 28.1
BcaNung07203 Brassica carinata HOM05D000010 ORTHO05D000063 2.8e-16 90.5 358 27.7
BraA02t04811Z Brassica rapa HOM05D000010 ORTHO05D000063 1.1e-15 88.6 354 27.7
Aqoxy1G01096 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 3.1e-15 87.0 339 32.2
arahy.Tifrunner.gnm1.ann1.FFKU3L Arachis hypogaea HOM05D000010 ORTHO05D000063 4.1e-15 86.7 290 27.2
BolC1t05391H Brassica oleracea HOM05D000010 ORTHO05D000063 5.9e-14 82.8 366 27.0
BcaNung07217 Brassica carinata HOM05D000010 ORTHO05D000063 1.3e-13 81.6 274 30.3
Os02g0822400 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000063 3.2e-12 77.0 285 28.8
HanXRQChr07g0200591 Helianthus annuus HOM05D001700 ORTHO05D014127 2.8e-11 73.9 141 40.4
Zm00001eb191020 Zea mays HOM05D000010 ORTHO05D000063 5.2e-10 69.7 270 26.3
Zm00001eb038920 Zea mays HOM05D000010 ORTHO05D037262 7.5e-09 65.9 308 26.3
ATR0043G032 Amborella trichopoda HOM05D000010 ORTHO05D000063 1.3e-08 65.1 131 32.8
Zm00001eb175840 Zea mays HOM05D000010 ORTHO05D037262 1.3e-08 65.1 320 27.2
Os08g0562200 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D037262 3.7e-08 63.5 261 25.7
TAR636G3232 Trochodendron aralioides HOM05D000010 ORTHO05D000063 4.9e-08 63.2 74 43.2
Oeu020603.1 Olea europaea HOM05D018463 ORTHO05D000063 1.1e-07 62.0 137 29.2
Nn6g35218 Nelumbo nucifera HOM05D000010 ORTHO05D000063 7.0e-07 59.3 155 31.0


User provided reference genes

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