Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 2.5e-170 602.1 306 100.0
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.4e-149 533.1 302 89.1
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 5.9e-148 527.7 297 88.2
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.7e-147 526.2 302 88.7
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 6.5e-147 524.2 302 86.8
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 8.5e-147 523.9 302 88.1
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.5e-146 523.1 302 87.1
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.9e-146 522.7 302 86.8
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 3.2e-146 521.9 302 86.8
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.2e-146 521.5 302 86.1
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 7.2e-146 520.8 302 86.1
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 9.4e-146 520.4 302 87.1
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 9.4e-146 520.4 302 86.1
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.2e-145 520.0 302 86.1
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 3.6e-145 518.5 306 85.6
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 4.7e-145 518.1 302 87.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 4.7e-145 518.1 302 87.1
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 8.0e-145 517.3 302 86.4
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 8.0e-145 517.3 301 87.0
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 8.0e-145 517.3 302 85.8
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 8.0e-145 517.3 302 87.1
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.8e-144 516.2 302 85.4
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.8e-144 516.2 302 85.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.8e-144 516.2 303 86.5
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.3e-144 515.8 302 85.4
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.3e-144 515.8 302 84.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.0e-144 515.4 302 85.4
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 5.2e-144 514.6 302 85.4
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.3e-143 511.9 296 85.1
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 3.3e-143 511.9 302 84.4
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 5.7e-143 511.1 302 83.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 5.7e-143 511.1 302 86.1
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 5.7e-143 511.1 302 85.1
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.5e-143 510.8 306 84.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.2e-142 509.2 294 86.7
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.2e-142 509.2 303 85.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.2e-142 509.2 350 76.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.8e-142 508.8 302 85.1
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 8.2e-142 507.3 306 82.7
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.1e-141 505.0 302 84.1
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.0e-140 502.7 304 83.9
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.0e-140 502.7 306 83.3
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 2.7e-140 502.3 295 85.1
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 3.5e-140 501.9 303 81.8
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.0e-139 500.4 301 84.7
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.7e-139 499.6 305 83.0
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.7e-139 499.6 304 83.9
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.2e-139 499.2 302 81.1
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-138 496.9 304 83.2
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.1e-138 496.9 302 82.5
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.5e-138 495.7 302 83.8
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 5.5e-138 494.6 302 81.8
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 7.2e-138 494.2 327 78.6
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 2.1e-137 492.7 302 81.5
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.3e-136 489.2 310 80.3
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.3e-136 489.2 295 83.7
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 5.2e-136 488.0 302 79.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.2e-136 488.0 310 81.0
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 6.8e-136 487.6 302 80.1
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 6.8e-136 487.6 302 80.1
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 6.8e-136 487.6 302 80.1
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 8.8e-136 487.3 303 80.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.5e-135 486.5 302 79.5
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 5.7e-135 484.6 306 79.1
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-134 483.0 302 79.1
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.7e-134 483.0 302 79.1
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 2.8e-134 482.3 306 78.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.8e-134 482.3 296 80.7
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-133 479.9 302 78.5
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-133 479.9 302 78.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-133 479.9 302 78.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.4e-133 479.9 302 78.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.4e-133 479.9 302 78.5
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 3.1e-133 478.8 296 78.7
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 4.1e-133 478.4 303 78.2
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.4e-133 478.0 302 80.1
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.0e-132 476.1 302 76.5
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.5e-132 475.3 299 81.9
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 3.5e-132 475.3 303 78.9
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.3e-131 473.4 301 80.7
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 2.3e-131 472.6 302 79.8
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 5.0e-131 471.5 301 78.4
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 8.6e-131 470.7 303 77.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 4.2e-130 468.4 302 78.1
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 5.5e-130 468.0 303 77.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 7.2e-130 467.6 303 76.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.6e-129 466.5 312 75.3
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.1e-129 466.1 302 77.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.3e-128 462.6 301 77.4
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 5.2e-128 461.5 302 76.2
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 5.2e-128 461.5 294 77.2
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 8.9e-128 460.7 304 77.3
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.2e-127 460.3 301 76.4
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.2e-127 460.3 301 75.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 3.4e-127 458.8 304 77.0
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 2.8e-126 455.7 301 75.7
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 4.9e-126 454.9 314 72.9
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.1e-125 453.8 243 91.8
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.4e-125 452.6 312 73.4
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.4e-125 452.6 312 73.4
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 4.1e-125 451.8 294 76.5
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.0e-125 451.1 297 77.1
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.5e-124 448.4 317 72.2
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.6e-123 444.5 317 71.6
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.6e-122 441.4 317 71.3
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 6.1e-121 438.0 248 85.9
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.2e-118 429.5 302 70.5
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.7e-118 428.7 303 72.3
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.3e-115 420.2 300 71.7
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.9e-110 402.5 233 85.4
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.4e-109 400.2 233 84.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 7.3e-106 387.9 243 80.7
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 3.6e-105 385.6 284 66.5
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 8.1e-105 384.4 287 64.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.1e-101 374.0 277 75.1
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 7.1e-101 371.3 301 59.1
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 3.5e-100 369.0 274 63.9
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.3e-99 367.1 301 65.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 6.6e-99 364.8 210 84.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.6e-99 364.4 282 69.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 3.3e-98 362.5 217 81.1
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.6e-97 360.1 270 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 4.7e-97 358.6 301 58.1
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 9.9e-87 324.3 243 63.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.0e-83 312.8 244 69.7
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 2.1e-73 280.0 268 48.1
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.8e-73 278.9 149 88.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 7.6e-71 271.6 308 45.5
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.0e-70 271.2 302 52.3
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.1e-64 249.6 156 81.4
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.1e-53 214.5 225 46.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.5e-47 194.1 147 66.0
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.1e-45 188.0 112 79.5
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 4.4e-42 176.0 288 36.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.2e-38 163.7 189 51.3
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 1.9e-37 160.6 360 32.2
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.5e-34 151.0 114 70.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-34 150.2 94 75.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.4e-34 148.7 94 74.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.4e-34 148.7 94 74.5
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.1e-32 141.7 84 83.3
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.6e-31 141.0 114 67.5
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 4.5e-31 139.4 95 75.8
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-18 97.8 62 80.6
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.8e-18 95.1 53 84.9
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.4e-16 90.5 96 55.2
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.4e-16 89.4 100 53.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-13 80.9 59 69.5
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.5e-13 80.5 45 86.7
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.5e-13 80.5 45 86.7
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 9.5e-13 78.6 50 76.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 8.3e-09 65.5 85 44.7
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-06 55.8 30 83.3
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-06 55.8 30 83.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-06 55.8 30 83.3
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-06 55.8 30 83.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-06 55.8 30 83.3


User provided reference genes

Program Settings