Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.4e-292 1008.8 498 100.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.4e-252 875.9 493 86.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.9e-249 865.5 492 85.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.8e-248 860.9 493 84.6
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 8.2e-248 860.1 491 85.5
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.4e-247 858.6 494 85.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.1e-247 858.2 495 84.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.2e-246 856.3 495 84.6
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.5e-246 855.9 494 83.4
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.5e-246 855.9 493 85.6
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.6e-246 855.1 493 84.6
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.6e-246 855.1 494 84.4
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.5e-246 854.4 495 84.2
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.0e-245 853.2 497 83.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.2e-245 852.0 493 84.2
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 5.0e-245 850.9 494 83.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 6.5e-245 850.5 495 84.4
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 8.4e-245 850.1 494 83.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.1e-244 849.7 488 85.0
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.4e-244 849.4 493 82.6
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.9e-244 849.0 493 84.2
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.2e-244 848.2 487 84.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.7e-243 845.1 495 83.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 6.1e-243 844.0 494 83.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 7.9e-243 843.6 494 82.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-242 842.8 488 84.2
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.8e-242 842.4 493 83.4
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.3e-242 842.0 504 81.9
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.0e-242 841.6 488 84.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.7e-242 840.5 494 82.4
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-241 839.3 488 83.6
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.5e-241 839.3 533 79.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.9e-241 839.0 495 83.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-241 839.0 488 83.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 3.3e-241 838.2 495 83.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.3e-241 837.8 493 83.2
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.7e-241 836.6 508 81.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.2e-240 835.5 494 82.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.8e-240 835.1 495 82.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.7e-240 834.7 494 81.8
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.8e-240 834.3 493 82.8
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.8e-240 834.3 493 82.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 8.2e-240 833.6 494 82.2
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.1e-239 833.2 493 81.9
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-239 833.2 496 82.1
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.1e-239 831.6 493 81.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.3e-239 830.9 495 83.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-239 830.5 495 82.4
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.9e-239 830.5 486 83.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 6.9e-239 830.5 493 81.9
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.5e-238 829.3 493 82.8
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.0e-238 828.9 486 83.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.6e-238 828.6 489 82.4
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-238 828.6 493 81.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.5e-238 827.8 492 82.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.9e-238 827.4 486 83.1
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 5.9e-238 827.4 528 77.7
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 7.7e-238 827.0 479 84.1
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 7.7e-238 827.0 493 81.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.0e-237 826.6 491 83.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.0e-237 826.6 493 81.5
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.2e-237 825.5 492 82.1
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.8e-237 824.7 493 82.4
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 5.0e-237 824.3 487 82.8
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.1e-236 823.2 493 82.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.4e-236 822.8 493 82.2
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.9e-236 822.4 492 81.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-236 822.4 493 81.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.2e-236 821.6 493 81.9
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.2e-236 821.2 496 81.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.6e-235 819.3 487 81.1
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.1e-235 818.9 495 80.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-235 818.5 486 81.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.7e-235 818.5 493 80.9
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 7.9e-235 817.0 495 80.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 7.9e-235 817.0 493 81.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.4e-234 816.2 487 80.9
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.4e-234 816.2 493 81.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.3e-234 815.5 487 80.7
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.0e-234 815.1 486 81.3
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 6.7e-234 813.9 487 80.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 8.8e-234 813.5 493 80.5
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-233 813.1 486 81.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.5e-233 812.8 487 81.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.0e-233 812.4 487 81.3
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-233 812.4 486 82.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.3e-233 811.2 487 79.9
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.3e-233 811.2 496 80.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 9.7e-233 810.1 487 80.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.7e-232 809.3 487 80.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.7e-232 809.3 490 80.0
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.7e-232 808.1 495 79.4
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.4e-231 805.4 491 79.6
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.5e-230 802.7 482 81.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.0e-230 802.4 489 80.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 3.4e-230 801.6 498 77.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 7.7e-230 800.4 489 79.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.0e-229 800.0 486 79.2
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.0e-226 790.0 484 79.3
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-224 781.6 493 77.5
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.3e-221 773.1 486 77.4
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.2e-219 766.5 484 77.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 8.2e-216 753.8 437 84.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 4.1e-215 751.5 435 82.5
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 4.1e-215 751.5 442 82.6
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.2e-214 750.0 513 73.1
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.5e-214 748.4 492 74.6
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.2e-213 745.7 441 82.5
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.7e-208 729.6 442 79.9
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.7e-206 722.2 488 73.0
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.9e-204 716.1 439 79.7
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.6e-203 713.0 440 80.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 4.5e-198 694.9 485 71.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.9e-196 689.5 389 86.4
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.1e-195 684.5 487 68.6
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.7e-192 675.2 485 72.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.2e-187 660.2 403 79.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.9e-184 649.0 494 67.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.7e-184 648.7 382 82.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.4e-183 644.8 471 71.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.3e-176 620.9 383 80.4
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.1e-175 620.5 509 62.3
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.1e-172 610.5 498 65.1
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-169 600.1 390 77.7
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.1e-163 577.8 461 68.1
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.1e-159 567.4 396 71.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 7.8e-158 561.2 346 80.1
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 6.9e-146 521.5 531 51.2
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.5e-135 485.3 266 89.1
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-121 439.9 245 87.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.9e-119 433.7 459 51.2
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.3e-112 411.0 241 80.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-108 397.9 475 49.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-108 396.7 301 68.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-107 394.0 228 84.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.1e-106 389.4 238 77.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.5e-105 386.0 431 51.0
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 5.9e-105 385.6 252 74.2
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.8e-96 356.3 303 65.7
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-91 339.7 236 71.6
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-89 334.0 310 59.4
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.2e-87 326.6 234 67.9
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 5.6e-79 299.3 248 65.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.5e-57 226.9 158 69.6
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.5e-55 220.7 260 49.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 6.8e-53 212.6 148 68.9
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.5e-52 211.5 297 45.1
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.3e-48 197.6 103 90.3
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 8.9e-45 185.7 147 63.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.0e-44 184.5 96 89.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 7.6e-44 182.6 98 89.8
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.2e-42 176.8 215 49.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.1e-39 168.7 122 69.7
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.7e-35 154.8 147 55.1
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.3e-32 145.2 156 53.2
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.0e-32 144.1 75 90.7
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 3.4e-28 130.6 79 75.9
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 3.5e-25 120.6 85 68.2
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 8.4e-19 99.4 100 54.0
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 7.9e-17 92.8 69 65.2
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 8.2e-14 82.8 61 72.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.5e-10 71.2 36 86.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 3.2e-10 70.9 47 66.0
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.7e-09 67.8 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.5e-07 62.0 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 4.3e-07 60.5 38 78.9


User provided reference genes

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