Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 2.0e-212 742.3 402 100.0
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 6.4e-134 481.5 390 70.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 4.1e-133 478.8 352 77.6
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 9.2e-133 477.6 404 68.8
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 4.7e-129 465.3 372 71.8
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 6.8e-128 461.5 391 67.3
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 8.9e-128 461.1 396 67.2
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 9.8e-127 457.6 351 72.6
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 9.8e-127 457.6 406 66.7
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 1.3e-126 457.2 404 66.8
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 2.2e-126 456.4 402 64.9
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 3.7e-126 455.7 405 65.4
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 7.1e-125 451.4 428 63.3
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 3.5e-124 449.1 400 67.0
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 3.5e-124 449.1 390 65.9
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 6.0e-124 448.4 394 66.2
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.9e-122 443.4 294 81.0
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 5.6e-122 441.8 398 64.3
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 8.1e-121 438.0 381 65.9
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 1.4e-120 437.2 336 72.0
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 2.3e-120 436.4 399 63.2
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 5.2e-120 435.3 415 61.2
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 5.8e-119 431.8 396 62.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 5.8e-119 431.8 397 64.7
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 7.6e-119 431.4 407 64.1
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 2.2e-118 429.9 398 62.8
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 4.9e-118 428.7 369 65.6
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 6.4e-118 428.3 332 72.3
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.9e-117 426.8 346 69.9
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 3.2e-117 426.0 389 63.5
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 4.1e-117 425.6 339 71.1
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 7.1e-117 424.9 338 69.8
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 7.1e-117 424.9 427 60.2
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 7.1e-117 424.9 401 61.8
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.5e-116 422.5 389 63.8
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.0e-115 421.0 338 68.6
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.3e-115 420.6 349 69.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.7e-115 420.2 322 72.4
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.7e-115 420.2 403 63.3
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.7e-115 420.2 403 63.3
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 1.7e-115 420.2 399 61.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.0e-115 419.5 403 63.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.0e-115 419.5 338 68.6
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.9e-115 419.1 338 68.3
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 3.9e-115 419.1 390 65.4
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 6.6e-115 418.3 349 68.5
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.6e-115 418.3 403 63.3
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 8.6e-115 417.9 407 61.4
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 8.6e-115 417.9 400 61.5
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 1.1e-114 417.5 340 68.2
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.9e-114 416.8 400 61.5
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.9e-114 416.8 325 71.7
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 1.9e-114 416.8 378 64.6
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.6e-113 413.7 392 62.0
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 2.1e-113 413.3 392 63.0
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.8e-113 412.9 406 59.9
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 3.6e-113 412.5 408 60.0
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.6e-113 412.5 331 68.9
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 4.7e-113 412.1 379 62.8
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 6.2e-113 411.8 347 67.4
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 6.2e-113 411.8 347 67.4
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 8.1e-113 411.4 336 67.9
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 8.1e-113 411.4 273 79.9
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 2.4e-112 409.8 326 69.9
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.9e-112 408.3 309 73.1
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 6.9e-112 408.3 346 66.5
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 1.5e-111 407.1 404 61.1
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 3.4e-111 406.0 402 61.2
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 4.4e-111 405.6 293 74.1
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 9.9e-111 404.4 317 71.6
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 2.2e-110 403.3 343 67.1
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 2.2e-110 403.3 324 69.4
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 4.9e-110 402.1 377 62.3
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 4.9e-110 402.1 296 72.0
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 8.4e-110 401.4 410 60.7
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.4e-109 400.6 399 59.9
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 1.9e-109 400.2 400 60.0
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.4e-109 399.8 398 59.5
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 3.2e-109 399.4 406 60.3
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 7.1e-109 398.3 445 56.9
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 3.3e-106 389.4 261 78.9
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 4.5e-103 379.0 403 57.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.9e-102 376.3 362 61.3
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.4e-101 374.0 380 60.0
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.9e-101 373.6 361 59.0
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 4.2e-101 372.5 348 63.8
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.4e-101 372.1 362 60.2
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 2.7e-100 369.8 331 61.3
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 6.7e-99 365.2 376 58.5
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 3.3e-98 362.8 417 55.4
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 3.3e-98 362.8 250 78.4
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 5.6e-98 362.1 317 61.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 5.3e-96 355.5 380 58.9
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 2.4e-93 346.7 424 50.7
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 3.2e-93 346.3 282 65.2
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.6e-92 344.0 429 49.7
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 2.7e-92 343.2 246 74.8
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 6.0e-92 342.0 237 77.2
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 2.8e-89 333.2 300 62.7
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 2.4e-88 330.1 338 57.7
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 4.5e-87 325.9 202 80.7
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 2.5e-85 320.1 307 57.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.0e-84 315.5 221 75.6
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 7.9e-84 315.1 324 59.3
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.5e-82 310.8 327 58.4
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 8.5e-78 295.0 407 50.1
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 5.1e-75 285.8 422 47.9
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 1.1e-72 278.1 283 54.1
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 6.9e-72 275.4 277 54.9
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 9.1e-72 275.0 192 77.1
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.2e-65 253.8 277 52.7
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 3.7e-65 253.1 278 55.0
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.4e-64 250.4 259 57.1
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 6.9e-64 248.8 198 66.2
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 2.2e-62 243.8 274 52.2
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.5e-58 231.1 171 70.8
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 6.3e-57 225.7 277 47.7
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.9e-53 214.2 130 84.6
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.7e-49 199.9 143 73.4
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.1e-45 188.3 148 67.6
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 4.4e-42 176.4 129 75.2
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 3.6e-36 156.8 267 36.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.0e-35 155.2 122 68.0
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.8e-24 117.9 82 79.3
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 4.1e-24 116.7 190 38.4
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-22 112.1 211 33.2
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 5.6e-21 106.3 66 77.3
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.3e-21 105.9 157 48.4
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 4.7e-12 76.6 41 97.6
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.3e-09 68.6 126 46.0
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.4e-08 64.3 35 91.4
Dinv07254 Davidia involucrata HOM05D005749 ORTHO05D007208 2.3e-06 57.8 28 100.0
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 5.1e-06 56.6 294 23.1


User provided reference genes

Program Settings