Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 0.0e+00 1239.9 631 100.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 8.8e-247 857.1 723 65.4
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.1e-239 831.2 721 63.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.0e-234 814.7 659 65.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 8.2e-229 797.3 692 63.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.2e-227 793.5 718 63.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 6.5e-226 787.7 721 62.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 4.4e-222 775.0 666 62.9
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 2.2e-221 772.7 723 60.0
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.4e-220 770.0 783 57.2
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.6e-219 766.5 679 61.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 5.0e-218 761.5 726 59.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 1.6e-216 756.5 637 65.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.7e-216 755.0 646 62.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 6.1e-216 754.6 694 59.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.4e-215 753.4 651 62.7
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 1.5e-214 750.0 650 63.5
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 2.2e-213 746.1 659 62.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.1e-212 743.8 638 63.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.4e-212 742.7 646 62.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 7.0e-212 741.1 680 59.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 9.1e-212 740.7 640 63.8
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 1.6e-211 740.0 650 62.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 2.9e-210 735.7 638 63.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 4.2e-209 731.9 707 59.3
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.5e-209 731.5 692 58.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 7.2e-209 731.1 692 58.4
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 2.8e-208 729.2 670 59.7
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 2.8e-208 729.2 647 62.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 6.1e-208 728.0 682 59.4
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 8.0e-208 727.6 651 60.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.4e-207 726.9 645 61.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 5.2e-207 724.9 639 62.3
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 8.9e-207 724.2 645 62.0
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.5e-206 723.4 654 59.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.0e-206 723.0 529 71.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.0e-206 723.0 638 62.9
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 5.7e-206 721.5 664 60.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.5e-206 721.1 663 60.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 9.8e-206 720.7 702 56.1
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.7e-205 719.9 709 58.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 2.8e-205 719.2 650 60.5
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 3.7e-205 718.8 639 61.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 4.9e-205 718.4 683 60.0
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.1e-204 715.3 641 61.2
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 7.0e-204 714.5 706 56.1
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-203 713.0 690 58.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 6.6e-202 708.0 638 61.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.4e-199 700.3 700 56.4
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.6e-198 696.0 526 68.8
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 3.4e-198 695.7 702 55.4
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 7.5e-198 694.5 666 57.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 7.5e-198 694.5 704 56.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 9.8e-198 694.1 641 60.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.3e-197 693.7 683 57.2
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.9e-197 692.6 525 68.6
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 3.7e-197 692.2 638 59.2
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 6.4e-197 691.4 683 57.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 1.1e-196 690.6 700 55.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 2.4e-196 689.5 707 55.0
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 2.0e-195 686.4 681 54.8
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 2.7e-195 686.0 705 55.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 4.6e-195 685.3 707 55.3
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 7.8e-195 684.5 666 57.7
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 1.3e-194 683.7 639 57.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.0e-194 682.6 463 80.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 3.3e-193 679.1 691 57.0
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 2.1e-192 676.4 674 56.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.5e-190 670.2 629 57.9
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 4.9e-189 665.2 668 58.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 1.2e-187 660.6 645 56.6
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 3.0e-186 656.0 681 53.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.8e-184 649.4 684 52.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 4.7e-184 648.7 639 56.5
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.1e-183 647.5 691 53.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.4e-183 647.1 764 51.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 2.3e-183 646.4 649 55.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-182 642.9 632 55.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 3.4e-182 642.5 681 52.3
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 4.4e-182 642.1 681 52.3
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 9.9e-182 641.0 680 52.5
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 2.2e-181 639.8 679 53.0
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 4.9e-181 638.6 685 52.4
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 6.4e-181 638.3 645 54.6
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-180 636.3 638 54.5
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 2.4e-180 636.3 645 54.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.1e-180 635.6 645 54.6
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 4.6e-179 632.1 681 52.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.7e-178 630.2 650 54.2
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-178 629.8 645 54.4
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-177 627.1 646 53.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 2.5e-177 626.3 688 52.9
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 4.0e-175 619.0 680 52.1
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 8.9e-175 617.8 680 51.9
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-172 610.5 682 51.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.9e-172 610.1 637 53.4
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.4e-172 609.8 528 59.8
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 9.2e-172 607.8 655 51.9
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.6e-168 597.0 642 52.0
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.8e-165 585.9 524 60.7
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 3.3e-153 546.2 642 51.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 6.7e-138 495.4 590 49.7
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 2.2e-136 490.3 537 54.6
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.5e-129 466.8 528 52.8
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 6.3e-128 462.2 333 73.9
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.9e-122 443.0 486 53.7
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 4.8e-112 409.5 506 49.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.0e-111 405.6 560 43.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.7e-110 402.1 510 47.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.7e-109 401.0 539 43.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.2e-109 400.6 552 42.8
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.5e-108 397.9 227 83.7
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.2e-108 396.4 536 42.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.4e-103 380.6 543 45.9
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.4e-103 380.6 548 41.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 6.8e-98 362.5 452 51.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.2e-96 357.5 537 40.4
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.0e-94 350.9 487 46.2
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 5.2e-90 336.3 351 52.1
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.0e-86 324.3 185 81.6
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 8.3e-80 302.4 397 49.4
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 7.3e-68 262.7 140 89.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.0e-66 256.9 195 64.1
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-63 248.8 140 86.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.6e-62 245.0 348 45.1
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-62 244.6 121 100.0
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.7e-62 244.2 142 81.7
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-61 242.3 246 53.7
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 4.0e-58 230.3 255 50.6
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.6e-52 209.9 120 85.0
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.8e-51 207.6 121 84.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.5e-46 190.7 325 44.3
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.3e-45 188.7 555 31.4
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.0e-45 187.6 305 42.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-43 182.2 195 55.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.1e-42 177.6 147 62.6
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 8.7e-37 159.5 85 88.2
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 3.7e-35 154.1 346 28.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.9e-34 149.8 559 25.9
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.2e-33 149.1 82 84.1
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.6e-33 147.9 165 53.9
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.2e-32 144.8 82 80.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.5e-28 132.1 297 35.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 9.6e-28 129.4 150 48.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 3.1e-26 124.4 134 50.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.1e-26 124.0 117 55.6
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.9e-21 107.5 102 56.9
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.7e-16 92.0 243 26.7
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.5e-07 60.5 198 30.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 9.4e-07 59.7 297 22.9


User provided reference genes

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