Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.5e-308 1060.4 541 100.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.7e-211 737.3 545 69.5
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.4e-200 703.4 527 68.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.7e-198 696.4 533 66.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.8e-193 678.3 545 66.6
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-191 673.3 541 66.5
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.2e-189 665.2 522 67.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 3.4e-183 645.6 579 62.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.5e-175 620.2 497 65.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 8.8e-171 604.4 581 59.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 8.2e-169 597.8 463 66.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 2.0e-167 593.2 542 58.7
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 3.2e-149 532.7 487 58.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 7.2e-149 531.6 518 56.2
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.2e-146 524.2 535 54.2
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.8e-144 516.9 522 55.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.7e-142 510.4 485 56.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.3e-142 510.0 485 58.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.8e-139 500.4 502 54.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.6e-138 496.5 510 54.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 7.5e-138 495.0 519 53.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 9.8e-138 494.6 510 54.5
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.7e-137 492.7 476 56.5
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 6.3e-137 491.9 492 54.1
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 6.3e-137 491.9 492 54.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.3e-137 491.9 503 54.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.7e-135 486.5 521 53.0
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-133 480.7 437 57.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.6e-132 476.1 520 52.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.7e-129 466.1 532 51.5
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 4.1e-128 462.6 514 52.5
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 4.1e-128 462.6 505 51.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.8e-127 458.4 417 58.0
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.0e-126 458.0 524 51.0
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.7e-126 457.2 502 52.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 3.0e-126 456.4 496 49.4
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 3.0e-126 456.4 518 50.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 6.6e-126 455.3 384 61.2
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 6.6e-126 455.3 518 50.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.7e-124 449.1 488 52.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.4e-123 447.6 513 49.3
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.8e-123 447.2 483 52.4
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.3e-123 446.8 496 49.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.8e-123 445.3 470 51.9
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.0e-122 443.7 590 44.7
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 5.8e-122 442.2 561 47.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 7.5e-122 441.8 482 52.7
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.3e-121 441.0 551 47.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.9e-121 439.9 499 48.5
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.4e-120 437.6 508 48.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.2e-120 436.4 483 51.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.0e-119 433.7 512 48.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 4.6e-119 432.6 545 45.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 7.8e-119 431.8 516 46.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.9e-118 429.5 527 48.6
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.5e-117 427.6 541 48.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.5e-117 426.8 549 45.2
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.3e-117 426.4 548 44.9
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 7.3e-117 425.2 539 48.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 9.5e-117 424.9 415 55.7
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 3.6e-116 422.9 515 50.3
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-116 422.9 533 46.0
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 6.2e-116 422.2 512 47.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.1e-115 421.4 539 47.1
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.1e-115 421.4 495 49.5
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.8e-115 420.6 543 45.9
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 4.0e-115 419.5 527 46.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 8.9e-115 418.3 424 52.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.4e-112 411.0 520 45.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.9e-112 410.6 577 44.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.4e-112 410.2 432 52.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.5e-111 406.4 429 53.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.3e-110 403.7 475 48.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 5.1e-110 402.5 521 44.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.9e-109 400.6 569 44.6
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.9e-109 400.6 488 48.4
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 7.3e-109 398.7 411 54.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.8e-108 396.7 536 44.6
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-107 394.4 510 45.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 6.8e-107 392.1 524 45.6
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-106 391.0 511 45.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.1e-104 382.9 477 46.5
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.8e-103 378.6 511 44.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 3.9e-102 376.3 572 41.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.8e-100 370.2 463 47.3
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.4e-99 367.9 457 45.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.4e-99 367.1 465 44.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.5e-98 364.4 502 47.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.4e-98 363.2 510 42.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 7.8e-95 352.1 394 52.0
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.3e-94 350.5 512 41.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.1e-93 348.2 443 46.7
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-92 344.7 481 41.2
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.3e-92 344.7 481 41.2
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-91 341.7 483 41.2
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-91 341.7 483 41.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-91 341.7 483 41.2
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.9e-91 339.0 405 52.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-90 338.2 480 41.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.3e-89 334.7 484 40.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.9e-89 332.8 492 42.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 8.4e-89 332.0 466 40.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.5e-87 326.6 484 40.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.5e-87 326.6 494 41.5
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.6e-85 318.5 502 40.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.5e-82 311.2 513 37.8
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.9e-80 304.3 489 38.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 8.2e-76 288.9 308 53.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.0e-75 286.6 523 36.3
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.9e-75 285.8 239 60.7
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 9.7e-69 265.4 317 50.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.1e-67 261.9 321 50.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.9e-67 259.2 344 48.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.9e-62 243.4 545 33.8
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-58 231.1 362 42.5
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.9e-57 227.3 298 48.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-56 224.9 328 42.7
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.6e-55 221.5 149 68.5
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.8e-52 210.7 174 56.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.8e-51 208.0 241 44.8
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.3e-51 206.5 217 50.7
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 6.3e-44 183.0 317 37.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 7.0e-43 179.5 242 40.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.7e-37 159.8 281 34.2
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.2e-36 157.9 390 29.2
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.1e-35 155.6 244 37.3
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.2e-31 142.1 222 38.7
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.0e-30 137.1 213 37.1
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-29 135.6 270 32.6
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.6e-29 134.4 157 47.8
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 4.8e-28 130.2 130 50.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.0e-25 120.2 95 55.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.0e-25 120.2 95 55.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.7e-23 113.6 333 26.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-21 107.8 256 29.7
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.5e-21 106.3 146 45.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.8e-21 105.9 151 45.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 3.1e-19 100.9 262 27.5
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 8.6e-17 92.8 244 27.0
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 8.6e-17 92.8 244 27.0
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 8.6e-17 92.8 244 27.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-16 92.0 244 26.6
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-16 92.0 244 26.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-09 68.9 65 46.2
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 5.6e-08 63.5 293 21.8


User provided reference genes

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