Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.3e-70 269.6 136 100.0
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.9e-67 258.1 134 97.0
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.5e-66 256.1 134 96.3
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.9e-66 255.8 134 95.5
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.9e-66 255.8 134 95.5
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 2.5e-66 255.4 134 95.5
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.8e-64 249.2 135 92.6
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.8e-64 249.2 137 92.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 3.2e-61 238.4 136 88.2
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 3.2e-61 238.4 137 86.9
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.1e-61 238.0 135 85.9
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-60 236.5 132 90.2
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.6e-60 236.1 133 89.5
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-60 235.3 135 84.4
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-60 235.3 135 84.4
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.7e-60 235.3 135 84.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.7e-60 235.3 135 85.2
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.0e-59 233.4 135 85.9
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.3e-59 233.0 143 84.6
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.7e-59 232.6 134 85.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.7e-59 232.6 135 84.4
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.7e-59 232.6 135 84.4
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.7e-59 232.6 136 87.5
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.0e-59 231.9 135 84.4
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.0e-59 231.9 135 84.4
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 3.0e-59 231.9 136 86.0
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 5.1e-59 231.1 131 86.3
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.9e-58 229.2 135 83.7
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.3e-58 228.4 135 83.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 3.3e-58 228.4 131 84.7
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 7.3e-58 227.3 137 83.2
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 7.3e-58 227.3 129 85.3
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 7.3e-58 227.3 134 86.6
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 9.6e-58 226.9 137 83.9
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-57 226.5 135 83.0
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 2.1e-57 225.7 132 82.6
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.1e-57 225.7 132 82.6
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 2.1e-57 225.7 133 85.7
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 2.8e-57 225.3 135 82.2
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 3.6e-57 224.9 133 86.5
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.2e-57 224.2 136 81.6
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 6.2e-57 224.2 132 81.8
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 6.2e-57 224.2 132 82.6
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 6.2e-57 224.2 132 82.6
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 6.2e-57 224.2 132 82.6
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.2e-57 224.2 134 83.6
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 8.1e-57 223.8 137 82.5
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.1e-56 223.4 135 82.2
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.4e-56 223.0 134 82.1
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 1.8e-56 222.6 134 82.1
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 2.4e-56 222.2 135 80.7
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 2.4e-56 222.2 132 81.1
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 4.0e-56 221.5 132 82.6
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.2e-55 219.9 135 80.7
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-55 219.9 135 81.5
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.0e-55 219.2 135 81.5
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 3.4e-55 218.4 143 78.3
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 3.4e-55 218.4 143 78.3
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.4e-55 218.0 129 82.2
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 9.9e-55 216.9 132 83.3
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.3e-54 216.5 132 82.6
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.3e-54 216.5 132 82.6
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 2.2e-54 215.7 132 82.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 2.2e-54 215.7 132 82.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 2.2e-54 215.7 132 82.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 2.9e-54 215.3 132 82.6
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 2.9e-54 215.3 132 82.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 2.9e-54 215.3 132 82.6
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.9e-54 215.3 132 82.6
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.9e-54 215.3 132 81.8
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 8.4e-54 213.8 132 81.1
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.9e-53 212.6 132 82.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.9e-53 212.6 132 81.1
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.9e-53 212.6 135 79.3
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.4e-53 212.2 123 85.4
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.2e-53 211.8 123 85.4
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 4.2e-53 211.5 125 82.4
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 5.4e-53 211.1 132 78.0
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.4e-53 211.1 157 72.6
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 5.4e-53 211.1 135 80.0
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.1e-53 210.7 161 68.9
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-52 209.5 132 78.8
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.6e-52 209.5 135 74.8
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.6e-52 209.5 132 81.1
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.7e-52 208.8 129 78.3
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 4.6e-52 208.0 132 79.5
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 7.8e-52 207.2 135 73.3
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 7.8e-52 207.2 132 78.8
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.3e-51 206.5 123 82.1
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.7e-51 206.1 132 74.2
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 2.3e-51 205.7 131 77.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.9e-50 202.6 124 80.6
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.5e-50 202.2 123 81.3
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 2.5e-50 202.2 135 72.6
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 7.3e-50 200.7 125 81.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 1.6e-49 199.5 134 72.4
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.8e-49 198.7 131 72.5
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 2.8e-49 198.7 135 75.6
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 2.6e-47 192.2 128 71.9
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 3.4e-47 191.8 120 80.0
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 3.4e-47 191.8 120 80.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 4.5e-47 191.4 135 74.1
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 7.6e-47 190.7 110 90.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.3e-46 189.9 124 73.4
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-45 186.4 108 88.0
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 5.4e-45 184.5 107 86.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 5.4e-45 184.5 107 86.0
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.5e-44 181.8 108 85.2
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 6.0e-44 181.0 121 77.7
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 7.9e-44 180.6 106 84.9
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 3.0e-43 178.7 139 68.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 3.0e-43 178.7 105 86.7
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 3.9e-43 178.3 108 85.2
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.6e-41 172.9 129 70.5
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 2.8e-41 172.2 122 73.0
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 9.9e-39 163.7 109 74.3
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 9.9e-39 163.7 115 70.4
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 1.7e-38 162.9 118 68.6
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 6.4e-38 161.0 105 79.0
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.3e-35 152.5 98 76.5
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-34 149.8 135 65.2
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 4.3e-34 148.3 132 57.6
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 4.8e-33 144.8 83 85.5
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.1e-32 143.7 85 83.5
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.4e-32 142.5 182 48.4
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 8.4e-30 134.0 83 80.7
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 1.1e-29 133.7 104 61.5
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 4.2e-29 131.7 83 81.9
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 5.5e-29 131.3 86 75.6
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.6e-28 128.3 74 83.8
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 6.0e-28 127.9 83 77.1
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-27 126.7 120 59.2
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.5e-26 122.5 114 54.4
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 7.4e-26 120.9 135 54.8
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.6e-25 119.8 106 65.1
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.1e-24 117.1 65 86.2
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 3.4e-23 112.1 96 61.5
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 5.0e-22 108.2 64 78.1
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 4.6e-20 101.7 58 84.5
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 9.7e-18 94.0 60 81.7
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.3e-17 93.6 51 84.3
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.3e-17 93.6 74 66.2
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.3e-17 93.6 125 39.2
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 4.8e-17 91.7 51 84.3
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.3e-17 91.3 49 91.8
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.8e-16 89.7 62 71.0
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.4e-16 89.4 107 45.8
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.6e-15 85.9 59 72.9
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 6.5e-14 81.3 45 84.4
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.1e-10 70.5 126 36.5
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.7e-09 66.6 82 52.4
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 9.1e-08 60.8 41 70.7
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.5e-07 60.1 55 60.0


User provided reference genes

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