Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 6.0e-76 287.3 137 100.0
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.3e-59 233.0 137 78.8
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 2.3e-59 232.3 137 78.1
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 5.6e-58 227.6 137 77.4
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 5.6e-58 227.6 137 77.4
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 8.2e-57 223.8 132 77.3
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.1e-56 223.4 133 76.7
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 4.0e-56 221.5 137 75.9
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 9.0e-56 220.3 137 75.2
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.0e-54 216.9 119 82.4
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 2.2e-54 215.7 143 70.6
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 5.5e-53 211.1 126 79.4
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 2.1e-52 209.1 130 72.3
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 2.7e-52 208.8 129 76.0
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 3.5e-52 208.4 121 75.2
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 7.9e-52 207.2 143 67.8
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.3e-51 206.5 141 73.0
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 6.7e-51 204.1 146 67.8
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.5e-50 203.0 143 67.8
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.9e-50 202.6 139 68.3
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 7.4e-50 200.7 146 66.4
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 7.4e-50 200.7 126 75.4
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 1.6e-49 199.5 133 70.7
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 3.7e-49 198.4 123 76.4
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 3.7e-49 198.4 142 67.6
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 4.8e-49 198.0 132 72.0
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.8e-49 198.0 132 72.0
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.8e-49 198.0 132 72.0
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.1e-48 196.8 114 78.1
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 1.1e-48 196.8 140 67.1
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.1e-48 196.8 111 78.4
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.4e-48 196.4 135 69.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.4e-48 196.4 146 64.4
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.4e-48 196.4 146 64.4
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-48 196.4 146 64.4
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 2.4e-48 195.7 119 72.3
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 3.1e-48 195.3 143 67.1
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 3.1e-48 195.3 133 67.7
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.3e-48 194.5 135 68.1
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 5.3e-48 194.5 124 71.8
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 5.3e-48 194.5 142 67.6
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 6.9e-48 194.1 156 64.1
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 6.9e-48 194.1 120 74.2
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.2e-47 193.4 151 62.3
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-47 193.4 129 70.5
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.2e-47 193.4 108 78.7
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 1.5e-47 193.0 140 66.4
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 2.0e-47 192.6 145 65.5
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 5.9e-47 191.0 139 66.2
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 5.9e-47 191.0 128 66.4
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 7.7e-47 190.7 141 67.4
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 7.7e-47 190.7 129 69.0
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 7.7e-47 190.7 124 66.9
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.0e-46 190.3 141 62.4
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 2.2e-46 189.1 124 69.4
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 6.5e-46 187.6 141 66.0
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 6.5e-46 187.6 108 77.8
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 8.5e-46 187.2 108 75.0
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 8.5e-46 187.2 114 74.6
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.1e-45 186.8 139 66.2
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 1.4e-45 186.4 138 65.9
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.9e-45 186.0 125 68.8
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.9e-45 186.0 138 65.9
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.9e-45 186.0 125 68.8
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 2.5e-45 185.7 125 68.0
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 2.5e-45 185.7 143 63.6
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 3.2e-45 185.3 146 64.4
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 3.2e-45 185.3 139 65.5
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 4.2e-45 184.9 119 69.7
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 7.2e-45 184.1 110 73.6
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 9.4e-45 183.7 119 71.4
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 9.4e-45 183.7 176 54.0
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 1.6e-44 183.0 144 61.8
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 4.6e-44 181.4 146 62.3
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 1.0e-43 180.3 146 61.6
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 5.1e-43 177.9 160 59.4
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 8.8e-43 177.2 112 70.5
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.5e-42 176.4 112 67.9
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.5e-42 175.6 109 67.9
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 2.5e-42 175.6 132 63.6
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 5.7e-42 174.5 111 67.6
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 7.4e-42 174.1 110 70.0
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.7e-41 172.9 111 68.5
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 2.2e-41 172.6 111 66.7
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 2.8e-41 172.2 135 58.5
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 2.8e-41 172.2 127 63.0
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 8.2e-41 170.6 134 59.7
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.1e-40 170.2 118 69.5
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 1.8e-40 169.5 125 62.4
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 1.8e-40 169.5 109 68.8
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 1.8e-40 169.5 135 60.0
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 2.4e-40 169.1 108 67.6
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 4.1e-40 168.3 143 58.0
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 1.2e-39 166.8 131 59.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.0e-38 163.7 161 52.2
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 2.9e-38 162.2 95 77.9
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.9e-38 162.2 95 78.9
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 6.5e-38 161.0 111 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 7.2e-37 157.5 112 60.7
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.2e-36 156.8 129 56.6
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.6e-36 156.4 116 59.5
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 6.1e-36 154.5 125 58.4
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 1.1e-34 150.2 113 57.5
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 3.6e-28 128.6 105 51.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.8e-27 126.3 129 49.6
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 7.0e-24 114.4 109 50.5
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 2.6e-23 112.5 94 55.3
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 4.5e-23 111.7 90 64.4
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 2.7e-20 102.4 53 86.8
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 6.1e-20 101.3 88 56.8
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 2.6e-18 95.9 98 45.9
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 1.8e-16 89.7 71 59.2
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.4e-16 89.4 51 74.5
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 3.1e-16 89.0 51 74.5
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.2e-15 87.0 51 72.5
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 1.6e-15 86.7 50 74.0
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 5.9e-15 84.7 57 63.2
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.3e-14 83.6 44 81.8
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 3.8e-14 82.0 49 73.5
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 1.1e-13 80.5 50 68.0
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 4.2e-13 78.6 48 72.9
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 9.1e-08 60.8 71 36.6
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 2.0e-07 59.7 94 39.4


User provided reference genes

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