Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 2.7e-186 655.2 332 100.0
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.4e-155 553.1 331 85.5
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 5.4e-155 551.2 333 85.0
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.3e-153 546.6 337 84.6
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.5e-152 543.1 329 84.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 5.6e-152 541.2 327 83.8
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.8e-150 536.2 323 83.6
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.9e-148 528.9 328 83.2
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 6.2e-143 511.1 338 79.3
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.4e-142 509.2 335 79.7
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.4e-141 505.0 309 83.2
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 7.6e-141 504.2 341 77.7
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 2.9e-140 502.3 333 78.4
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 3.8e-140 501.9 309 83.2
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.4e-140 501.1 329 79.0
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 8.4e-140 500.7 297 84.8
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.4e-139 500.0 338 77.8
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.2e-139 498.8 338 75.4
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 7.1e-139 497.7 338 76.3
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 7.1e-139 497.7 303 83.2
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.1e-138 496.1 332 77.1
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.1e-138 496.1 301 83.1
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.7e-138 495.7 311 79.7
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.5e-138 495.4 332 76.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.3e-137 493.4 328 77.4
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.7e-137 493.0 329 77.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 3.0e-137 492.3 334 75.7
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 3.9e-137 491.9 302 81.1
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 6.6e-137 491.1 291 82.1
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-136 490.0 297 82.5
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.5e-136 489.2 303 81.8
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.5e-136 489.2 282 85.5
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 7.3e-136 487.6 317 79.2
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 9.6e-136 487.3 299 82.3
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.3e-135 486.9 341 73.3
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.3e-135 486.9 321 76.9
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 2.1e-135 486.1 329 76.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.1e-135 486.1 301 80.1
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 2.1e-135 486.1 310 78.7
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.8e-135 485.7 294 80.6
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.6e-135 485.3 279 86.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 4.8e-135 485.0 288 82.3
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 4.8e-135 485.0 286 82.5
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 6.2e-135 484.6 288 81.9
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 6.2e-135 484.6 315 77.5
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 6.2e-135 484.6 334 73.7
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.1e-135 484.2 343 72.6
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.1e-135 484.2 295 80.3
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.1e-134 483.8 293 81.6
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.1e-134 483.8 343 72.0
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.4e-134 483.4 297 79.5
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.8e-134 483.0 324 75.3
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.4e-134 482.6 343 72.9
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.4e-134 482.6 341 74.2
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 3.1e-134 482.3 342 72.5
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 4.0e-134 481.9 321 75.1
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 6.9e-134 481.1 305 77.7
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 9.0e-134 480.7 305 77.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 9.0e-134 480.7 341 73.0
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 9.0e-134 480.7 305 77.7
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 9.0e-134 480.7 344 72.7
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.5e-133 479.9 287 81.5
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.0e-133 479.6 305 77.4
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 4.5e-133 478.4 349 72.8
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 7.6e-133 477.6 299 78.6
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 7.6e-133 477.6 294 79.3
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 7.6e-133 477.6 294 79.3
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.3e-132 476.9 304 79.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.8e-132 475.3 307 78.2
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 4.9e-132 474.9 305 77.7
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 6.4e-132 474.6 324 73.8
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.4e-132 474.6 301 77.4
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 8.4e-132 474.2 289 80.3
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-131 473.8 301 77.1
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.4e-131 472.6 302 78.1
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 3.2e-131 472.2 300 79.7
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 7.1e-131 471.1 316 75.6
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 7.1e-131 471.1 314 77.4
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.6e-130 469.9 280 80.7
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.7e-130 469.2 302 76.8
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 7.9e-130 467.6 302 78.8
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.1e-128 463.8 279 81.0
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.5e-125 453.4 270 81.1
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 5.8e-125 451.4 283 78.4
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.4e-123 446.8 290 78.3
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.1e-122 443.0 317 71.0
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.6e-122 441.8 262 85.1
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 5.1e-121 438.3 278 77.0
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-120 437.2 286 75.5
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 3.3e-120 435.6 276 76.4
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 9.6e-120 434.1 286 75.2
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 4.8e-119 431.8 340 66.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.4e-118 430.3 335 67.5
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.4e-110 402.9 273 77.7
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 3.6e-106 389.0 310 67.7
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 6.1e-106 388.3 211 91.0
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 2.5e-104 382.9 238 79.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.4e-101 372.5 244 80.3
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.4e-101 372.5 237 78.1
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 3.8e-100 369.0 223 81.2
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-99 365.5 235 77.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.9e-98 361.3 244 76.6
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 6.7e-97 358.2 247 74.9
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.6e-96 356.3 265 65.7
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.6e-96 356.3 262 63.7
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.7e-95 353.6 252 74.6
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 5.3e-94 348.6 252 70.2
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 2.2e-92 343.2 253 72.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 8.8e-89 331.3 207 76.3
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-87 326.6 308 61.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 7.7e-77 291.6 260 53.5
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 8.3e-71 271.6 159 84.3
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 9.1e-70 268.1 168 77.4
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.8e-60 236.1 159 77.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 3.3e-59 233.0 206 60.2
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 8.6e-52 208.4 325 40.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 1.1e-51 208.0 299 41.1
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.1e-50 203.8 120 80.8
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 3.1e-49 199.9 121 79.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 3.7e-47 193.0 116 81.0
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.9e-46 190.7 118 82.2
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.6e-45 187.6 128 72.7
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.7e-44 184.1 224 47.3
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.7e-37 160.2 333 35.1
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.6e-34 151.0 233 41.2
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 4.4e-32 142.9 76 92.1
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.1e-29 134.0 76 82.9
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 7.3e-27 125.6 281 31.3
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.2e-26 124.8 63 90.5
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.1e-25 121.7 90 68.9
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 7.6e-24 115.5 266 30.5
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 4.9e-23 112.8 72 75.0
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.3e-19 99.0 107 48.6
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.9e-14 84.3 153 35.9
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 2.7e-13 80.5 81 56.8
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.0e-12 78.6 69 62.3
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 5.8e-08 62.8 47 63.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 7.6e-08 62.4 59 57.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.9e-07 59.7 44 59.1
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 6.4e-07 59.3 47 63.8


User provided reference genes

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