Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025030 Lotus japonicus HOM05D006201 ORTHO05D007178 0.0e+00 1801.2 924 100.0
TPR.G6637 Trifolium pratense HOM05D006201 ORTHO05D007178 0.0e+00 1229.9 924 70.5
Psat3g124360 Pisum sativum HOM05D006201 ORTHO05D007178 0.0e+00 1228.8 935 70.3
Medtr7g070280 Medicago truncatula HOM05D006201 ORTHO05D007178 0.0e+00 1209.1 927 69.5
Glyma.07G156700 Glycine max HOM05D006201 ORTHO05D007178 0.0e+00 1171.0 913 69.1
VMungo1383G1579 Vigna mungo HOM05D006201 ORTHO05D007178 0.0e+00 1147.1 919 68.3
Lalb_Chr01g0023361 Lupinus albus HOM05D006201 ORTHO05D007178 0.0e+00 1077.8 932 63.6
arahy.Tifrunner.gnm1.ann1.0N3F9M Arachis hypogaea HOM05D006201 ORTHO05D007178 6.8e-256 887.9 951 52.3
arahy.Tifrunner.gnm1.ann1.WUZ318 Arachis hypogaea HOM05D006201 ORTHO05D007178 1.7e-254 883.2 954 51.8
Ca_07697_v3 Cicer arietinum L. HOM05D006201 ORTHO05D007178 9.8e-247 857.4 731 67.2
Cfa017112 Carpinus fangiana HOM05D006201 ORTHO05D007178 1.5e-234 817.0 950 50.3
CiPaw.09G215500 Carya illinoinensis HOM05D006201 ORTHO05D007178 4.4e-231 805.4 942 48.8
QL07p033902 Quercus lobata HOM05D006201 ORTHO05D007178 2.1e-228 796.6 944 49.7
Haze_21088 Corylus avellana HOM05D006201 ORTHO05D007178 1.1e-224 784.3 968 48.6
Prupe.6G285000 Prunus persica HOM05D006201 ORTHO05D007178 1.8e-224 783.5 947 48.8
MD04G1166800 Malus domestica HOM05D006201 ORTHO05D007178 3.0e-219 766.1 935 48.4
CANSAT35G1627 Cannabis sativa HOM05D006201 ORTHO05D007178 6.4e-214 748.4 938 46.4
FAN05G0393 Fragaria x ananassa HOM05D006201 ORTHO05D007178 3.8e-206 722.6 923 46.7
FAN05G0066 Fragaria x ananassa HOM05D006201 ORTHO05D007178 2.4e-205 719.9 923 46.6
Thecc.05G006600 Theobroma cacao HOM05D006201 ORTHO05D007178 2.4e-205 719.9 930 46.3
Gohir.A04G095500 Gossypium hirsutum HOM05D006201 ORTHO05D007178 6.0e-204 715.3 935 45.9
Gorai.012G119200 Gossypium raimondii HOM05D006201 ORTHO05D007178 7.9e-204 714.9 936 45.9
Manes.09G111900 Manihot esculenta HOM05D006201 ORTHO05D007178 5.6e-202 708.8 935 46.2
TWI77G1003 Tripterygium wilfordii HOM05D006201 ORTHO05D007178 1.6e-201 707.2 942 46.2
Sabra16G0130900 Salix brachista HOM05D006201 ORTHO05D007178 1.3e-195 687.6 936 45.1
Actinidia11549 Actinidia chinensis HOM05D006201 ORTHO05D007178 1.8e-195 687.2 941 45.0
ClCG03G002510 Citrullus lanatus HOM05D006201 ORTHO05D007178 1.5e-194 684.1 823 46.1
Ciclev10024812m.g Citrus clementina HOM05D006201 ORTHO05D007178 1.3e-193 681.0 927 45.2
Duzib093G1324 Durio zibethinus HOM05D006201 ORTHO05D007178 1.6e-193 680.6 932 44.8
CsaV3_1G013180 Cucumis sativus L. HOM05D006201 ORTHO05D007178 9.0e-192 674.9 821 45.3
vmacro20327 Vaccinium macrocarpon HOM05D006201 ORTHO05D007178 7.6e-191 671.8 975 43.3
FAN14G5119 Fragaria x ananassa HOM05D006201 ORTHO05D007178 4.9e-190 669.1 967 43.6
Cpa.g.sc861.1 Carica papaya HOM05D006201 ORTHO05D007178 8.4e-190 668.3 944 43.2
Sed0013207 Sechium edule HOM05D006201 ORTHO05D007178 3.5e-188 662.9 816 45.2
Lj2C67G1 Lonicera japonica HOM05D006201 ORTHO05D007178 4.6e-188 662.5 913 44.6
Rhsim05G0225800 Rhododendron simsii HOM05D006201 ORTHO05D007178 7.4e-186 655.2 974 42.4
FAN02G1356 Fragaria x ananassa HOM05D006201 ORTHO05D007178 5.3e-184 649.0 923 43.7
MELO3C004988.2 Cucumis melo HOM05D006201 ORTHO05D007178 2.3e-179 633.6 821 44.3
PGR004G1794 Punica granatum HOM05D006201 ORTHO05D007178 8.8e-179 631.7 940 42.4
Phvul.008G092200 Phaseolus vulgaris HOM05D006201 ORTHO05D007178 2.1e-172 610.5 480 69.2
MSTRG.5539 Avicennia marina HOM05D006201 ORTHO05D007178 3.6e-172 609.8 919 41.3
Oeu020418.1 Olea europaea HOM05D006201 ORTHO05D007178 3.9e-171 606.3 921 42.2
DCAR_023994 Daucus carota HOM05D006201 ORTHO05D007178 3.5e-167 593.2 926 39.6
Aqoxy1G01280 Aquilegia oxysepala HOM05D006201 ORTHO05D007178 4.5e-167 592.8 949 39.7
HanXRQChr12g0375461 Helianthus annuus HOM05D006201 ORTHO05D007178 1.7e-166 590.9 918 40.3
Cc06_g00730 Coffea canephora HOM05D006201 ORTHO05D007178 3.9e-163 579.7 941 40.7
Lsat_1_v5_gn_5_149661 Lactuca sativa HOM05D006201 ORTHO05D007178 6.7e-163 578.9 945 38.6
Nitab4.5_0006173g0010 Nicotiana tabacum HOM05D006201 ORTHO05D007178 1.7e-161 574.3 915 40.1
CARHR083120 Cardamine hirsuta HOM05D006201 ORTHO05D007178 2.8e-161 573.5 934 39.1
Aa31LG5G18800 Aethionema arabicum HOM05D006201 ORTHO05D007178 2.4e-160 570.5 940 38.2
Nitab4.5_0003493g0040 Nicotiana tabacum HOM05D006201 ORTHO05D007178 4.1e-160 569.7 917 39.6
Carub.0003s0793 Capsella rubella HOM05D006201 ORTHO05D007178 4.5e-159 566.2 934 39.3
Gohir.D04G135400 Gossypium hirsutum HOM05D006201 ORTHO05D007178 7.7e-159 565.5 717 46.2
Sc22g0002850 Simmondsia chinensis HOM05D006201 ORTHO05D007178 3.2e-157 560.1 906 38.9
Migut.J00094 Erythranthe guttata HOM05D006201 ORTHO05D007178 4.2e-157 559.7 913 39.2
BraA05t22910Z Brassica rapa HOM05D006201 ORTHO05D007178 9.4e-157 558.5 920 39.2
COL.COLO4_14449 Corchorus olitorius HOM05D006201 ORTHO05D007178 1.6e-156 557.8 809 43.3
A05p40010 Brassica napus HOM05D006201 ORTHO05D007178 2.7e-156 557.0 920 39.1
AL3G19800 Arabidopsis lyrata HOM05D006201 ORTHO05D007178 1.8e-155 554.3 933 38.2
THA.LOC104823304 Tarenaya hassleriana HOM05D006201 ORTHO05D007178 1.8e-155 554.3 927 37.8
PGSC0003DMG400026051 Solanum tuberosum HOM05D006201 ORTHO05D007178 3.0e-155 553.5 921 38.9
C05p59050 Brassica napus HOM05D006201 ORTHO05D007178 5.2e-155 552.7 927 38.3
BolC5t34557H Brassica oleracea HOM05D006201 ORTHO05D007178 6.8e-155 552.4 928 38.3
Thhalv10022535m.g Eutrema salsugineum HOM05D006201 ORTHO05D007178 1.5e-154 551.2 932 38.2
Sp3g07220 Schrenkiella parvula HOM05D006201 ORTHO05D007178 2.0e-154 550.8 934 37.9
Sopen01g036050 Solanum pennellii HOM05D006201 ORTHO05D007178 2.0e-154 550.8 921 38.8
EL10Ac5g12480 Beta vulgaris HOM05D006201 ORTHO05D007178 3.4e-154 550.1 919 38.7
PSO349G0155 Papaver somniferum HOM05D006201 ORTHO05D007178 7.5e-154 548.9 958 38.4
AUR62036404 Chenopodium quinoa HOM05D006201 ORTHO05D007178 2.2e-153 547.4 935 37.5
PSO017G2042 Papaver somniferum HOM05D006201 ORTHO05D007178 2.8e-153 547.0 941 39.3
Ah.12g059100 Amaranthus hybridus HOM05D006201 ORTHO05D007178 9.1e-152 542.0 930 36.5
MBI09_g02137_MAGBIO Magnolia biondii HOM05D006201 ORTHO05D007178 2.7e-151 540.4 941 38.4
FvH4_6g10600 Fragaria vesca HOM05D006201 ORTHO05D007178 5.9e-151 539.3 694 46.4
BcaC05g29618 Brassica carinata HOM05D006201 ORTHO05D007178 1.6e-148 531.2 912 37.6
RcHm_v2.0_Chr3g0461591 Rosa chinensis HOM05D006201 ORTHO05D007178 1.7e-145 521.2 674 46.0
SGA_v2.0_scaffold85G26680 Striga asiatica HOM05D006201 ORTHO05D007178 1.7e-145 521.2 933 38.5
GSVIVG01030267001 Vitis vinifera HOM05D006201 ORTHO05D007178 4.5e-143 513.1 675 47.3
AUR62030757 Chenopodium quinoa HOM05D006201 ORTHO05D007178 6.6e-134 482.6 793 37.2
Eucgr.K02944 Eucalyptus grandis HOM05D006201 ORTHO05D007178 2.9e-129 467.2 679 43.2
CSS0012693 Camellia sinensis var. sinensis HOM05D006201 ORTHO05D007178 2.0e-127 461.1 703 43.2
AUR62044474 Chenopodium quinoa HOM05D006201 ORTHO05D007178 1.3e-121 441.8 818 35.5
Dinv12171 Davidia involucrata HOM05D006201 ORTHO05D007178 7.8e-119 432.6 561 45.6
TAR623G1020 Trochodendron aralioides HOM05D006201 ORTHO05D007178 2.5e-117 427.6 563 46.4
Solyc01g090260.5.1 Solanum lycopersicum HOM05D006201 ORTHO05D007178 1.6e-116 424.9 697 38.6
ECA248G2923 Erigeron canadensis HOM05D006201 ORTHO05D007178 1.2e-111 408.7 1141 28.6
CAN.G1473.10 Capsicum annuum HOM05D006201 ORTHO05D007178 1.7e-110 404.8 648 39.0
Nn4g22431 Nelumbo nucifera HOM05D006201 ORTHO05D007178 9.6e-109 399.1 623 40.9
Atru.chr8.2337 Acer truncatum HOM05D006201 ORTHO05D007178 8.9e-107 392.5 494 49.4
AT3G08800 Arabidopsis thaliana HOM05D006201 ORTHO05D007178 8.7e-102 375.9 654 39.0
unitig_578.g15909 Utricularia gibba HOM05D006201 ORTHO05D007178 4.4e-98 363.6 946 32.3
Zm00001eb012870 Zea mays HOM05D006201 ORTHO05D007178 6.9e-91 339.7 777 32.2
HPP92_025099 Vanilla planifolia HOM05D006201 ORTHO05D007178 4.9e-89 333.6 701 33.2
Potri.016G127500 Populus trichocarpa HOM05D006201 ORTHO05D007178 3.0e-86 324.3 509 40.1
CDE04G1687 Ceratophyllum demersum HOM05D006201 ORTHO05D007178 2.5e-80 304.7 932 28.9
Hund14937 Selenicereus undatus HOM05D006201 ORTHO05D007178 1.5e-77 295.4 369 47.7
Rhsim05G0226000 Rhododendron simsii HOM05D006201 ORTHO05D007178 5.0e-73 280.4 506 36.8
Dinv12170 Davidia involucrata HOM05D006201 ORTHO05D007178 6.7e-70 270.0 361 48.2
Hma1.2p1_0479F.1_g161690 Hydrangea macrophylla HOM05D006201 ORTHO05D007178 4.8e-68 263.8 350 42.3
Hund14942 Selenicereus undatus HOM05D006201 ORTHO05D007178 8.2e-68 263.1 471 35.2
ClCG10G022450 Citrullus lanatus HOM05D006201 ORTHO05D007178 9.4e-64 249.6 679 30.0
Mapoly0011s0138 Marchantia polymorpha HOM05D006201 ORTHO05D007178 2.0e-61 241.9 841 27.0
ATR0605G352 Amborella trichopoda HOM05D006201 ORTHO05D007178 4.8e-60 237.3 308 44.8
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.0e-54 219.5 278 47.1
Peaxi162Scf00028g00419 Petunia axillaris HOM05D006201 ORTHO05D007178 8.8e-54 216.5 422 37.9
Pp3c1_35690 Physcomitrium patens HOM05D006201 ORTHO05D007178 5.2e-46 190.7 381 34.4
AagrBONN_evm.TU.Sc2ySwM_344.1123 Anthoceros agrestis HOM05D006201 ORTHO05D007178 2.0e-45 188.7 571 28.4
ATR0605G310 Amborella trichopoda HOM05D006201 ORTHO05D007178 6.3e-44 183.7 344 36.3
RcHm_v2.0_Chr3g0461601 Rosa chinensis HOM05D006201 ORTHO05D007178 3.2e-40 171.4 229 47.2
SEGI_17367 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 1.2e-39 169.5 222 44.1
CANSAT64G1736 Cannabis sativa HOM05D006201 ORTHO05D007178 1.4e-30 139.4 121 62.0
SEGI_30477 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 7.0e-27 127.1 395 25.8
Peaxi162Scf00028g00413 Petunia axillaris HOM05D006201 ORTHO05D007178 6.6e-25 120.6 385 30.1
CAN.G1473.9 Capsicum annuum HOM05D006201 ORTHO05D007178 2.1e-23 115.5 195 40.5
SMO351G0194 Selaginella moellendorffii HOM05D006201 ORTHO05D007178 3.5e-18 98.2 369 25.7
CARHR220410 Cardamine hirsuta HOM05D006201 ORTHO05D007178 2.5e-16 92.0 131 38.2
Nn2g13629 Nelumbo nucifera HOM05D001630 ORTHO05D007178 7.3e-16 90.5 477 22.4
CBR_g8780 Chara braunii HOM05D006201 ORTHO05D007178 1.0e-14 86.7 309 26.5
Rhsim05G0225900 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.9e-09 68.2 102 42.2
SEGI_33665 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 7.3e-08 63.9 146 29.5


User provided reference genes

Program Settings