Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.2e-34 148.3 70 100.0
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 5.5e-17 90.5 61 65.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.6e-16 89.0 61 63.9
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.6e-16 89.0 61 63.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.8e-15 85.5 62 64.5
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.8e-15 85.5 62 64.5
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.5e-14 82.4 60 63.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.6e-14 81.6 60 61.7
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.7e-14 80.5 60 60.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.4e-14 80.1 62 61.3
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 7.4e-14 80.1 60 63.3
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 7.4e-14 80.1 61 60.7
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 7.4e-14 80.1 61 60.7
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.7e-13 79.0 62 58.1
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.7e-13 79.0 61 59.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.2e-13 78.6 60 61.7
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.2e-13 78.6 61 60.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 2.8e-13 78.2 60 60.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.7e-13 77.8 59 61.0
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 6.3e-13 77.0 60 61.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.1e-12 76.3 62 58.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.4e-12 75.9 62 56.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.4e-12 75.1 60 56.7
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.4e-12 75.1 61 54.1
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 3.1e-12 74.7 60 56.7
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 9.1e-12 73.2 60 58.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.1e-12 73.2 63 54.0
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 9.1e-12 73.2 59 55.9
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.2e-11 72.8 60 58.3
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-11 72.8 60 58.3
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.6e-11 72.4 60 50.0
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.6e-11 72.4 61 59.0
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.6e-11 72.4 60 58.3
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 2.0e-11 72.0 61 55.7
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.6e-11 71.6 62 56.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.6e-11 71.6 60 56.7
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 3.5e-11 71.2 60 55.0
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.5e-11 71.2 60 56.7
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.5e-11 70.9 61 54.1
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 5.9e-11 70.5 60 53.3
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 7.7e-11 70.1 59 55.9
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 7.7e-11 70.1 62 53.2
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.0e-10 69.7 61 52.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.0e-10 69.7 61 52.5
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.3e-10 69.3 60 56.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.9e-10 68.2 61 50.8
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.9e-10 68.2 62 56.5
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 3.8e-10 67.8 62 54.8
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.8e-10 67.8 59 52.5
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.8e-10 67.8 59 54.2
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.8e-10 67.8 59 54.2
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 6.5e-10 67.0 60 51.7
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 6.5e-10 67.0 63 49.2
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 6.5e-10 67.0 63 55.6
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.1e-09 66.2 61 52.5
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.5e-09 65.9 63 47.6
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.5e-09 65.9 59 49.2
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.9e-09 65.5 60 55.0
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.9e-09 65.5 59 50.8
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.5e-09 65.1 62 50.0
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.5e-09 65.1 60 51.7
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.2e-09 64.3 60 51.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.2e-09 64.3 62 50.0
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 5.5e-09 63.9 48 58.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 5.5e-09 63.9 62 45.2
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.5e-09 63.9 60 55.0
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 5.5e-09 63.9 60 53.3
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 5.5e-09 63.9 61 45.9
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 7.2e-09 63.5 48 60.4
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 7.2e-09 63.5 68 48.5
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 7.2e-09 63.5 49 59.2
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 7.2e-09 63.5 58 51.7
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-08 62.4 59 52.5
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.1e-08 62.0 59 49.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.7e-08 61.6 62 45.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.7e-08 61.6 60 48.3
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.6e-08 61.2 53 52.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.6e-08 61.2 62 50.0
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 4.7e-08 60.8 59 50.8
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 4.7e-08 60.8 60 50.0
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 6.1e-08 60.5 61 44.3
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.0e-07 59.7 48 52.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 5.2e-07 57.4 61 49.2
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 6.7e-07 57.0 61 42.6
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 6.7e-07 57.0 62 43.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.2e-06 56.2 60 43.3
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.2e-06 56.2 43 60.5
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.5e-06 55.8 63 47.6
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.5e-06 55.8 60 45.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.7e-06 53.9 59 49.2


User provided reference genes

Program Settings