Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 0.0e+00 1621.3 853 100.0
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 0.0e+00 1208.0 862 77.3
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1172.1 864 74.5
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 0.0e+00 1171.4 865 74.6
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 0.0e+00 1163.7 868 74.5
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 0.0e+00 1161.0 861 73.9
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1150.2 859 75.0
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1139.8 869 72.4
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1139.8 862 72.7
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 0.0e+00 1131.7 878 72.2
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 0.0e+00 1117.8 878 72.0
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 0.0e+00 1075.5 911 66.8
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.5e-281 972.2 900 60.7
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 6.7e-274 947.6 887 60.5
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 6.9e-271 937.6 901 58.7
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 2.9e-269 932.2 901 59.0
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 1.1e-268 930.2 893 59.6
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 5.1e-266 921.4 911 58.3
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 8.7e-266 920.6 908 57.8
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 1.2e-262 910.2 922 57.2
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.5e-262 909.8 898 59.0
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 2.1e-259 899.4 797 61.7
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.0e-258 897.1 937 54.6
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.3e-258 896.0 826 60.0
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.9e-258 895.2 926 55.7
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.9e-258 895.2 917 56.5
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 8.7e-258 894.0 920 56.2
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 2.5e-257 892.5 941 56.3
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.6e-256 889.8 922 56.6
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 5.9e-254 881.3 897 56.4
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 2.9e-253 879.0 870 57.6
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 3.8e-253 878.6 808 59.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 3.2e-252 875.5 895 55.2
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 9.4e-252 874.0 889 55.5
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 9.4e-252 874.0 890 57.3
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.6e-251 873.2 803 60.6
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 2.1e-251 872.8 893 56.2
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.3e-248 863.6 884 57.2
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.7e-248 863.2 880 56.5
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.7e-248 862.1 969 53.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.8e-248 861.7 807 58.7
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 1.4e-247 860.1 909 54.1
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 5.3e-247 858.2 867 55.8
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 3.2e-244 849.0 897 54.5
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.0e-242 844.0 784 59.4
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 3.9e-242 842.0 867 54.7
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.2e-240 836.3 892 54.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.9e-238 828.2 892 55.0
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.2e-234 815.1 825 56.2
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.1e-233 813.9 820 55.5
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 1.1e-233 813.9 881 53.5
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 1.8e-231 806.6 929 52.7
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 9.1e-231 804.3 932 51.4
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 2.6e-230 802.7 946 49.6
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 7.7e-230 801.2 903 52.6
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.0e-229 800.8 851 54.3
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 1.3e-229 800.4 929 52.5
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 5.0e-229 798.5 809 54.8
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 8.5e-229 797.7 891 52.1
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 4.2e-228 795.4 890 52.5
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.0e-225 786.6 885 53.2
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 7.5e-225 784.6 871 52.0
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 1.2e-222 777.3 837 53.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.6e-222 776.9 885 50.5
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 4.5e-222 775.4 812 55.0
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 7.7e-222 774.6 783 57.5
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 2.2e-221 773.1 899 52.3
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.5e-220 770.4 891 50.7
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 4.2e-220 768.8 805 53.8
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 7.2e-220 768.1 781 55.2
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 9.4e-220 767.7 781 55.2
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 2.7e-219 766.1 885 52.0
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 8.0e-219 764.6 812 52.5
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 6.8e-218 761.5 737 56.3
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 2.6e-217 759.6 777 56.0
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 7.5e-217 758.1 732 56.3
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 9.8e-217 757.7 791 53.6
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 2.8e-216 756.1 803 53.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 2.4e-215 753.1 796 54.5
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 8.3e-208 728.0 795 52.5
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 7.3e-204 714.9 741 53.6
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 1.6e-203 713.8 803 51.8
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.2e-201 707.6 863 50.5
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 2.6e-201 706.4 793 51.7
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.9e-196 690.3 829 48.7
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 5.2e-194 682.2 678 58.1
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 6.8e-186 655.2 696 53.4
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 6.4e-184 648.7 725 49.8
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.2e-182 644.4 641 56.5
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 1.2e-177 627.9 871 45.2
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 1.5e-177 627.5 811 47.0
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 4.0e-170 602.8 743 47.9
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 1.4e-162 577.8 869 43.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.6e-161 573.5 477 62.3
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.0e-157 561.6 589 54.3
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 8.1e-155 552.0 494 60.9
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 7.1e-151 538.9 480 61.0
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 6.7e-149 532.3 408 66.2
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 6.7e-149 532.3 882 42.4
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 2.4e-138 497.3 577 51.6
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.9e-127 461.1 395 61.0
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 4.1e-106 390.2 745 35.8
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.1e-90 339.0 222 75.7
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.7e-89 334.3 370 54.6
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 1.2e-86 325.5 801 32.5
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.0e-84 318.2 669 33.3
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 3.7e-83 313.9 1004 29.3
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 4.1e-82 310.5 478 41.8
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 2.7e-81 307.8 1097 27.9
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 1.2e-60 239.2 223 59.6
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 3.3e-55 221.1 282 46.1
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 6.4e-51 206.8 135 74.1
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 2.6e-44 184.9 247 53.4
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 3.4e-36 157.9 197 49.2
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 1.3e-35 156.0 219 42.9
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 1.5e-20 105.9 63 69.8
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.6e-17 94.4 140 47.9
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 5.1e-16 90.9 55 74.5
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 7.4e-15 87.0 81 53.1
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 1.5e-12 79.3 556 20.0
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 3.8e-11 74.7 86 50.0
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 3.8e-11 74.7 86 50.0
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.2e-09 69.7 828 23.2
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.0e-08 66.6 107 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 5.7e-07 60.8 73 45.2


User provided reference genes

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