Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.4e-181 638.6 315 100.0
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.8e-150 535.0 315 84.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.8e-150 535.0 313 85.0
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.6e-148 529.6 313 83.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 6.7e-147 524.2 316 82.9
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-144 516.9 313 82.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.4e-144 516.5 312 81.4
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.0e-142 508.1 313 81.2
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.0e-142 508.1 313 80.8
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.4e-136 489.2 318 77.4
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 6.5e-134 481.1 318 77.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.1e-133 480.3 317 76.3
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.7e-132 475.7 312 77.6
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-131 473.0 316 74.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 5.2e-131 471.5 316 74.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.5e-130 469.9 318 73.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.0e-130 469.5 312 75.0
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 9.7e-130 467.2 315 73.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 9.7e-130 467.2 313 72.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.8e-129 465.7 318 72.6
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.8e-129 464.9 316 73.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.4e-128 463.4 312 75.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.1e-128 461.8 315 74.0
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 5.3e-128 461.5 312 73.7
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.6e-127 459.9 335 74.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.6e-127 459.9 315 73.0
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.7e-127 459.1 316 72.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.7e-127 459.1 316 72.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 7.7e-127 457.6 317 73.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.0e-126 457.2 312 73.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.8e-126 455.3 312 73.1
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 6.5e-126 454.5 326 69.3
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.9e-125 453.0 320 72.2
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.2e-125 452.2 316 72.2
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.2e-125 451.1 316 72.2
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.6e-124 449.9 316 71.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.6e-124 449.9 319 71.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.7e-124 449.1 315 72.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.1e-124 448.0 317 70.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.1e-124 448.0 317 70.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-124 448.0 342 66.7
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.0e-124 447.6 310 70.0
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.4e-123 446.8 315 70.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.0e-123 445.7 312 73.7
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.0e-122 443.0 340 67.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.6e-122 442.6 316 71.2
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.4e-122 441.8 316 70.6
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.3e-121 440.3 309 70.6
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.7e-121 439.9 328 69.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.4e-120 436.8 316 68.4
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.2e-119 433.7 315 69.5
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.6e-119 433.3 311 67.8
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 3.5e-119 432.2 309 68.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.5e-119 431.8 307 68.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 7.7e-119 431.0 320 68.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.0e-118 430.6 310 68.1
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.7e-118 429.9 317 69.4
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.7e-118 429.9 286 73.1
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.9e-118 429.1 317 69.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 5.0e-118 428.3 313 69.6
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 6.5e-118 427.9 315 69.5
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.9e-117 426.4 311 67.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.2e-117 425.6 307 67.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.2e-116 423.7 311 67.8
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-116 423.7 314 70.1
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.6e-116 423.3 321 67.0
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.1e-116 422.9 315 67.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.6e-116 422.2 312 66.3
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 8.0e-116 421.0 311 66.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.0e-115 420.6 316 66.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.4e-115 420.2 316 66.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.0e-115 419.1 310 67.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 6.8e-115 417.9 318 67.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.0e-114 416.4 307 66.4
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.4e-114 415.6 307 66.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.4e-114 415.6 310 66.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.4e-114 415.2 312 65.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 7.5e-114 414.5 312 65.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.3e-113 413.7 312 65.4
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-113 413.7 312 65.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-113 413.7 312 65.4
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-113 413.7 312 67.6
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.2e-113 412.9 284 72.2
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.9e-113 411.8 320 66.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.1e-112 409.1 251 78.1
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.1e-112 409.1 309 66.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 4.1e-112 408.7 315 66.3
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 7.8e-111 404.4 313 65.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.0e-110 404.1 322 64.9
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 3.8e-110 402.1 283 72.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.8e-110 402.1 322 64.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 8.6e-110 401.0 312 66.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 5.6e-109 398.3 321 64.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 7.3e-109 397.9 319 64.3
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 7.3e-109 397.9 283 72.4
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.3e-109 397.9 294 69.0
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.2e-108 397.1 316 65.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 3.6e-108 395.6 318 65.4
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.8e-107 393.3 283 70.3
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.3e-105 387.1 325 64.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.1e-104 384.0 318 63.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 9.2e-104 380.9 326 61.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.0e-103 379.8 281 70.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 6.6e-102 374.8 316 61.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 6.2e-100 368.2 283 69.3
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.9e-99 364.4 294 65.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.4e-98 362.5 261 70.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 9.8e-98 360.9 323 60.1
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-97 360.1 283 66.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.7e-97 359.0 283 66.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-96 357.5 218 76.1
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 5.4e-96 355.1 314 57.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.5e-95 352.4 219 77.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.3e-93 345.9 289 60.9
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 8.9e-91 337.8 317 58.0
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.6e-90 336.3 236 71.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.4e-88 329.7 268 65.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 5.6e-85 318.5 231 71.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 7.3e-85 318.2 328 52.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.4e-82 308.9 263 61.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.9e-81 306.2 281 57.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.9e-81 306.2 257 63.8
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.0e-75 284.6 229 65.5
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.9e-73 278.9 226 65.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 2.4e-72 276.6 281 57.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 9.3e-72 274.6 268 54.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 3.9e-70 269.2 232 56.9
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.8e-68 263.1 161 75.8
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.0e-66 256.9 172 66.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.8e-66 255.4 191 70.7
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.9e-66 254.6 267 52.8
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 8.4e-65 251.5 222 60.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.5e-63 246.1 224 60.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.3e-62 244.2 208 61.1
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.3e-61 239.6 182 72.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.2e-60 235.3 219 58.4
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.2e-60 235.3 219 58.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 7.1e-56 221.9 230 50.0
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.7e-54 214.9 223 55.6
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 8.7e-54 214.9 227 56.4
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.1e-51 208.0 140 70.7
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 5.3e-51 205.7 186 61.3
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.2e-49 200.3 141 70.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 3.7e-44 183.0 240 42.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.6e-42 176.8 112 72.3
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 3.4e-42 176.4 265 46.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 7.6e-42 175.3 232 44.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-38 164.5 153 49.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.9e-38 162.9 248 37.1
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.5e-37 161.0 136 58.8
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 5.7e-37 159.1 158 50.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-35 154.5 113 64.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-34 150.6 183 49.7
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-34 150.6 183 49.7
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.5e-34 149.4 171 50.9
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 6.5e-33 145.6 187 50.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.4e-32 144.4 155 46.5
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-31 141.0 113 69.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-25 120.6 82 69.5
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 8.5e-25 118.6 81 66.7
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.5e-24 117.1 169 47.9
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.1e-23 114.0 99 58.6
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.7e-23 113.6 108 60.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 4.7e-23 112.8 74 60.8
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.0e-23 112.1 103 50.5
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 5.2e-22 109.4 74 60.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.1e-21 108.2 66 63.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 5.7e-21 105.9 71 59.2
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.8e-20 103.6 102 44.1
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.4e-19 101.3 63 65.1
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.4e-19 101.3 63 65.1
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.8e-19 100.9 63 65.1
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 5.9e-18 95.9 309 27.2
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.0e-17 95.1 68 58.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-17 95.1 67 59.7
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-17 95.1 67 59.7
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.0e-17 95.1 68 58.8
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.1e-16 91.7 89 60.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 7.2e-16 89.0 79 57.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.2e-15 88.2 92 58.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.4e-14 84.7 107 38.3
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 2.2e-09 67.4 176 32.4
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.0e-09 66.2 63 57.1
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.4e-08 62.0 83 47.0
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.8e-06 57.8 89 38.2
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.3e-06 57.4 68 48.5


User provided reference genes

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