Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.3e-238 829.3 426 100.0
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.1e-203 711.8 426 84.3
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.4e-200 702.2 433 82.7
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.0e-190 670.2 426 79.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.3e-190 669.8 426 79.1
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.8e-188 662.1 426 79.1
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 7.6e-186 654.1 427 77.8
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.7e-185 652.9 426 77.5
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 8.7e-182 640.6 428 75.9
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 9.0e-179 630.6 426 75.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.4e-178 628.6 423 76.6
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 9.9e-178 627.1 428 74.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.9e-174 615.1 427 73.3
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 6.7e-174 614.4 428 73.6
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 8.7e-174 614.0 428 73.4
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 4.3e-173 611.7 427 72.8
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 3.1e-171 605.5 427 71.7
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 6.9e-171 604.4 427 73.8
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 9.0e-171 604.0 427 72.4
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.0e-170 602.8 427 72.6
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.7e-169 599.7 427 73.3
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.9e-169 598.2 427 72.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.5e-168 595.9 427 72.6
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 2.5e-168 595.9 427 72.4
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.5e-167 592.0 424 73.3
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.6e-167 591.7 427 71.0
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.0e-167 591.3 427 71.2
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 2.3e-166 589.3 424 70.5
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.9e-166 588.6 427 72.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.9e-166 588.6 427 71.0
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 5.1e-166 588.2 427 71.0
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 8.7e-166 587.4 424 70.0
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-165 586.3 427 70.3
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.7e-165 584.7 427 69.8
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.6e-164 583.2 427 70.3
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 8.2e-164 580.9 427 70.7
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.2e-164 580.9 427 69.3
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 6.9e-163 577.8 427 69.3
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 9.0e-163 577.4 427 70.7
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 9.0e-163 577.4 424 69.8
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 9.0e-163 577.4 427 67.7
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 7.6e-162 574.3 424 69.6
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.6e-162 574.3 424 69.6
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 7.6e-162 574.3 427 69.1
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-161 573.9 427 69.3
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.2e-161 572.8 427 68.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.0e-161 571.6 428 68.5
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.0e-161 571.6 427 67.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.1e-160 570.5 427 67.9
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.9e-160 569.7 427 67.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.2e-160 568.9 427 67.0
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 9.4e-160 567.4 426 68.1
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.7e-159 565.8 427 67.4
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.6e-159 565.1 424 68.9
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 6.1e-159 564.7 428 69.9
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.9e-159 564.3 424 67.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 7.9e-159 564.3 427 66.7
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.8e-158 563.1 462 67.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.7e-158 561.2 427 67.4
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.1e-157 560.5 428 68.5
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.1e-157 560.5 425 68.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.3e-157 558.9 434 67.3
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.7e-156 555.4 428 67.5
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 6.3e-156 554.7 428 66.8
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 6.3e-156 554.7 427 67.9
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.1e-155 553.9 404 69.6
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.4e-155 552.7 424 66.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.1e-155 552.4 424 68.2
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.5e-154 550.1 461 64.4
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-154 549.7 466 63.3
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 2.6e-154 549.3 425 67.1
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.5e-154 548.5 431 64.5
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.5e-154 548.5 427 65.3
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 4.5e-154 548.5 427 65.3
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 7.7e-154 547.7 424 66.7
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 3.0e-150 535.8 427 65.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.5e-149 533.5 424 63.4
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.2e-148 529.6 425 64.0
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.1e-144 517.3 428 62.9
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.4e-144 516.9 427 64.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.6e-143 513.5 428 62.1
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.6e-143 513.5 424 61.3
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.7e-143 511.9 435 63.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 8.0e-143 511.1 428 62.6
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.3e-142 509.6 428 63.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.0e-142 509.2 425 64.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.0e-141 506.5 427 63.5
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 2.0e-141 506.5 385 67.3
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.3e-141 505.8 428 62.4
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 4.4e-141 505.4 428 62.6
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 4.8e-140 501.9 426 61.0
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.8e-140 501.9 427 62.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 9.1e-139 497.7 427 60.2
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 4.5e-138 495.4 418 60.3
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.9e-137 492.7 428 60.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 3.8e-137 492.3 427 60.4
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 6.5e-137 491.5 428 61.7
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-136 490.7 428 61.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-136 490.3 429 60.6
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.9e-136 490.0 429 60.6
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.9e-136 490.0 428 60.5
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.2e-136 489.2 427 61.1
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-135 487.3 427 59.5
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.6e-135 486.9 427 60.0
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-135 486.5 428 60.5
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.1e-135 486.5 427 59.7
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.7e-135 486.1 427 60.0
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.7e-135 486.1 427 60.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.6e-135 485.7 427 61.6
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 6.1e-135 485.0 427 60.0
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.0e-134 484.2 428 61.2
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-133 480.7 427 59.5
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.2e-133 480.7 315 77.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.5e-133 480.3 438 60.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.3e-133 479.2 427 60.4
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.4e-131 473.8 381 65.6
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.4e-131 473.8 326 73.9
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.5e-130 469.2 362 65.5
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 4.5e-130 468.8 428 58.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.2e-128 461.5 426 55.2
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.8e-126 456.8 447 56.6
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 4.0e-126 455.7 428 53.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.5e-125 453.8 388 61.9
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.8e-124 449.5 429 54.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.8e-121 439.1 452 51.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.1e-112 411.0 393 56.5
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 6.8e-110 401.7 398 56.3
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.6e-106 389.0 430 48.8
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 8.3e-100 368.2 243 79.0
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 3.0e-97 359.8 241 78.0
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.1e-94 351.3 338 55.9
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 8.3e-92 341.7 357 54.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-91 340.5 284 59.2
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 9.2e-91 338.2 358 54.7
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.0e-85 320.5 429 47.1
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.4e-67 260.4 432 36.6
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.3e-60 238.0 343 41.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.2e-60 237.3 216 58.3
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 9.3e-59 231.9 327 45.3
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 9.6e-56 221.9 192 63.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.1e-50 204.1 191 60.2
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 6.7e-49 199.1 358 39.9
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 2.6e-45 187.2 307 41.4
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.4e-45 186.8 191 55.5
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.8e-41 174.5 144 60.4
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.1e-38 165.2 253 43.1
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 7.7e-37 159.1 347 31.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.2e-28 131.0 152 51.3
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 3.2e-27 127.1 105 66.7
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.3e-24 117.1 120 50.8
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.6e-21 108.2 74 70.3
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.6e-21 107.5 78 64.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.6e-21 107.5 78 64.1
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 3.2e-19 100.5 340 25.0
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 2.3e-17 94.4 124 40.3
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.5e-13 80.1 62 62.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 7.7e-13 79.3 51 74.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.5e-11 74.3 95 44.2
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.7e-10 70.1 53 69.8
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 9.8e-08 62.4 77 46.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.3e-07 59.3 49 59.2
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 1.8e-06 58.2 49 57.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 5.4e-06 56.6 51 58.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.4e-06 56.6 51 58.8


User provided reference genes

Program Settings