Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.6e-43 178.3 90 100.0
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.6e-29 131.3 92 77.2
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.6e-29 131.3 92 77.2
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 8.1e-29 130.2 80 82.5
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.4e-28 129.4 80 83.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.3e-28 128.6 89 77.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.2e-28 127.5 80 82.5
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 6.8e-28 127.1 75 84.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 8.9e-28 126.7 80 82.5
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.2e-27 126.3 80 82.5
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.2e-27 126.3 80 82.5
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.2e-27 126.3 73 87.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.5e-27 125.9 80 81.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 2.0e-27 125.6 80 80.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.0e-27 125.6 80 81.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-27 125.6 88 76.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.0e-27 125.6 75 81.3
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 2.6e-27 125.2 80 80.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.6e-27 125.2 80 80.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 4.4e-27 124.4 78 82.1
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 4.4e-27 124.4 80 81.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 4.4e-27 124.4 88 76.1
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.8e-27 124.0 78 82.1
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.8e-27 124.0 78 82.1
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 7.5e-27 123.6 80 81.2
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.5e-27 123.6 80 78.8
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 7.5e-27 123.6 80 80.0
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 9.9e-27 123.2 80 80.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 9.9e-27 123.2 89 74.2
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.3e-26 122.9 80 78.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.2e-26 122.1 80 77.5
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.9e-26 121.7 78 78.2
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 3.7e-26 121.3 80 78.8
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.7e-26 121.3 76 80.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 3.7e-26 121.3 78 80.8
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 4.9e-26 120.9 75 81.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 6.4e-26 120.6 89 71.9
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.4e-26 120.6 78 79.5
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.3e-26 120.2 78 78.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.3e-26 120.2 80 78.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.3e-26 120.2 80 78.8
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 8.3e-26 120.2 90 73.3
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-25 119.8 80 78.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.1e-25 119.8 82 73.2
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.4e-25 119.4 80 78.8
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.4e-25 119.4 78 79.5
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.4e-25 119.4 90 73.3
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-25 118.6 80 77.5
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.4e-25 118.6 78 78.2
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.2e-25 118.2 75 80.0
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.1e-25 117.9 80 75.0
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 4.1e-25 117.9 78 76.9
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 4.1e-25 117.9 90 67.8
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.4e-25 117.5 78 78.2
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 5.4e-25 117.5 80 76.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.4e-25 117.5 80 77.5
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 5.4e-25 117.5 80 77.5
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 5.4e-25 117.5 80 77.5
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 9.2e-25 116.7 80 70.0
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 9.2e-25 116.7 74 79.7
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-24 116.3 88 68.2
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.2e-24 116.3 78 75.6
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.6e-24 115.9 78 78.2
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.1e-24 115.5 80 77.5
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.7e-24 115.2 76 78.9
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 3.5e-24 114.8 78 76.9
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 3.5e-24 114.8 78 76.9
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.5e-24 114.8 75 78.7
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 4.6e-24 114.4 80 75.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.6e-24 114.4 78 76.9
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.0e-24 114.0 89 68.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 6.0e-24 114.0 75 74.7
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.0e-23 113.2 80 71.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.3e-23 112.8 80 70.0
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.3e-23 112.8 79 72.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.3e-23 112.8 80 73.8
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.7e-23 112.5 78 76.9
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.7e-23 112.5 78 74.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.7e-23 112.5 78 73.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 2.3e-23 112.1 84 70.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.3e-23 112.1 77 74.0
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.0e-23 111.7 78 73.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 3.9e-23 111.3 74 74.3
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.9e-23 111.3 87 66.7
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.9e-23 111.3 76 75.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 5.1e-23 110.9 88 65.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.6e-23 110.5 78 73.1
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.1e-22 109.8 85 67.1
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.1e-22 109.8 78 70.5
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-22 109.4 88 65.9
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.9e-22 109.0 75 73.3
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.9e-22 109.0 78 74.4
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.5e-22 108.6 78 71.8
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.5e-22 108.6 76 72.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.3e-22 108.2 83 68.7
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.3e-22 108.2 73 74.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.3e-22 108.2 75 73.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.3e-22 108.2 80 68.8
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.3e-22 107.8 75 73.3
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 4.3e-22 107.8 75 73.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 4.3e-22 107.8 75 73.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 5.6e-22 107.5 75 73.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.3e-22 107.1 75 74.7
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 70.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 72.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 72.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 72.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 72.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 9.5e-22 106.7 75 72.0
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.2e-21 106.3 76 69.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-21 105.5 75 72.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-21 105.5 75 72.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.1e-21 105.5 75 70.7
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.6e-21 104.8 75 70.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.6e-21 104.8 75 72.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 4.7e-21 104.4 73 74.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.7e-21 104.4 78 71.8
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.7e-21 104.4 73 74.0
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 6.2e-21 104.0 75 70.7
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 6.2e-21 104.0 75 70.7
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 6.2e-21 104.0 75 70.7
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 6.2e-21 104.0 78 71.8
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 6.2e-21 104.0 80 67.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.8e-20 102.4 76 67.1
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.8e-20 100.5 74 68.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.6e-19 98.6 74 67.6
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-18 96.3 73 67.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-18 96.3 73 67.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.3e-18 96.3 73 67.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-17 92.8 72 68.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.1e-16 89.0 75 57.3
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 7.8e-16 87.0 80 53.8
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.3e-15 86.3 72 62.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.9e-14 82.4 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.3e-14 81.6 74 59.5
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.3e-14 81.6 74 59.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.1e-12 75.1 48 77.1
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-11 73.2 75 58.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-11 73.2 56 64.3
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-11 73.2 56 64.3
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.1e-09 66.6 68 51.5
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 7.1e-09 63.9 70 47.1
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 9.3e-09 63.5 38 81.6
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-08 62.4 48 64.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-07 58.9 40 70.0


User provided reference genes

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