Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 3.5e-25 117.9 76 100.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.5e-15 85.1 50 84.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 5.6e-15 84.0 47 87.2
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.6e-14 82.4 47 87.2
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.6e-14 82.4 67 82.1
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 4.7e-14 80.9 47 85.1
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 6.2e-14 80.5 47 85.1
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.4e-13 78.6 47 83.0
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 2.4e-13 78.6 47 83.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 4.4e-12 74.3 47 76.6
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 2.2e-11 72.0 47 80.9
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.2e-11 72.0 50 76.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 8.4e-11 70.1 55 60.0
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 8.4e-11 70.1 50 72.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.4e-10 69.3 43 76.7
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.9e-10 68.9 54 64.8
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 2.4e-10 68.6 43 74.4
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.4e-10 68.6 42 76.2
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 3.2e-10 68.2 50 70.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 3.2e-10 68.2 50 70.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 3.2e-10 68.2 50 70.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 3.2e-10 68.2 50 70.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.2e-10 68.2 43 74.4
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.2e-10 68.2 43 72.1
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 4.1e-10 67.8 50 68.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 5.4e-10 67.4 52 63.5
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 7.1e-10 67.0 43 74.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 7.1e-10 67.0 43 72.1
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 9.2e-10 66.6 50 68.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 9.2e-10 66.6 50 68.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 9.2e-10 66.6 43 74.4
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 1.2e-09 66.2 50 68.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 1.2e-09 66.2 50 68.0
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.6e-09 65.9 43 72.1
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.6e-09 65.9 46 67.4
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.7e-09 65.1 43 72.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 3.5e-09 64.7 43 72.1
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 3.5e-09 64.7 43 72.1
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 3.5e-09 64.7 50 66.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.6e-09 64.3 46 65.2
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.6e-09 64.3 46 65.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 6.0e-09 63.9 47 68.1
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 6.0e-09 63.9 51 62.7
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 7.8e-09 63.5 43 69.8
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 7.8e-09 63.5 46 65.2
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 7.8e-09 63.5 50 66.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 7.8e-09 63.5 43 67.4
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 7.8e-09 63.5 43 69.8
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 7.8e-09 63.5 41 68.3
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.0e-08 63.2 50 62.0
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.3e-08 62.8 43 67.4
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.3e-08 62.8 43 67.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.3e-08 62.8 47 63.8
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.3e-08 62.8 43 69.8
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.7e-08 62.4 43 65.1
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.7e-08 62.4 43 69.8
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.7e-08 62.4 43 67.4
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.3e-08 62.0 50 64.0
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.3e-08 62.0 50 64.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.3e-08 62.0 50 64.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.0e-08 61.6 50 60.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 3.0e-08 61.6 43 65.1
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 3.0e-08 61.6 50 64.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 3.9e-08 61.2 50 64.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.9e-08 61.2 50 56.0
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 3.9e-08 61.2 43 67.4
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.9e-08 61.2 43 67.4
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 5.1e-08 60.8 49 59.2
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 5.1e-08 60.8 51 58.8
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 5.1e-08 60.8 43 67.4
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 6.6e-08 60.5 43 65.1
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 6.6e-08 60.5 43 65.1
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 6.6e-08 60.5 61 49.2
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.7e-08 60.1 43 65.1
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.1e-07 59.7 43 65.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.5e-07 59.3 43 62.8
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.5e-07 59.3 43 62.8
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.9e-07 58.9 50 62.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.9e-07 58.9 40 72.5
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.5e-07 58.5 43 62.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.5e-07 58.5 51 56.9
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 7.3e-07 57.0 45 66.7
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 1.6e-06 55.8 51 58.8
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.8e-06 55.1 43 62.8
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 8.1e-06 53.5 60 53.3


User provided reference genes

Program Settings