Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 3.1e-270 934.5 453 100.0
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 2.4e-230 802.0 454 86.1
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.3e-228 796.2 451 86.3
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 8.0e-226 786.9 451 85.8
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 3.5e-221 771.5 451 84.0
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 6.8e-217 757.3 462 79.0
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 6.3e-215 750.7 414 87.9
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 3.1e-214 748.4 451 81.8
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.5e-203 713.0 458 76.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 9.5e-203 710.3 451 75.2
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 2.6e-200 702.2 451 72.7
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 5.8e-200 701.0 451 74.5
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 5.8e-200 701.0 448 74.8
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 7.5e-200 700.7 448 74.6
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 7.5e-200 700.7 448 74.1
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.4e-198 696.4 448 74.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 4.1e-198 694.9 453 72.2
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 8.6e-196 687.2 450 73.1
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 3.3e-195 685.3 452 73.0
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 9.5e-195 683.7 454 71.4
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.1e-193 680.2 470 70.4
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.4e-193 679.9 461 71.1
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 6.8e-193 677.6 453 72.2
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 2.6e-192 675.6 453 70.6
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 2.2e-191 672.5 454 70.9
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.2e-191 672.5 451 72.3
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 5.4e-190 667.9 452 71.2
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 2.7e-189 665.6 451 70.3
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.2e-186 656.8 450 69.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.6e-186 656.4 451 69.8
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 6.2e-186 654.4 498 64.3
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.1e-185 653.7 451 69.8
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 5.2e-185 651.4 491 66.0
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 4.4e-184 648.3 451 70.3
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.4e-182 642.5 453 68.4
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 3.2e-182 642.1 451 67.8
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 1.0e-180 637.1 456 66.9
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 1.0e-180 637.1 456 66.9
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.3e-180 636.7 456 66.9
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.3e-180 636.0 460 67.0
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 8.7e-180 634.0 451 68.5
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 5.6e-179 631.3 456 66.9
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 2.1e-178 629.4 450 66.4
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 4.0e-177 625.2 450 67.1
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 6.9e-177 624.4 453 67.1
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.2e-176 623.6 453 66.4
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 2.0e-176 622.9 453 66.9
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.0e-176 622.9 462 67.1
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 9.9e-176 620.5 453 66.4
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.2e-175 619.4 451 65.4
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 1.9e-174 616.3 450 65.6
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 7.8e-173 610.9 453 65.3
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.0e-172 610.5 488 62.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 1.1e-171 607.1 360 83.9
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.3e-170 603.6 473 64.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 4.0e-169 598.6 447 64.7
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.2e-168 597.0 527 56.7
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.3e-167 593.6 555 57.3
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.3e-167 593.6 530 58.1
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 3.8e-167 592.0 451 64.1
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.1e-166 590.5 451 63.2
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 9.3e-166 587.4 451 60.3
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.6e-165 585.1 451 60.1
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.0e-164 583.9 452 62.4
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.3e-164 583.6 448 61.2
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.8e-164 583.2 452 62.2
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 5.1e-164 581.6 432 67.1
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 6.7e-164 581.3 442 65.6
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 3.3e-163 578.9 457 62.6
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 1.3e-159 567.0 432 65.7
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.9e-159 565.1 472 62.1
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 7.1e-158 561.2 473 58.1
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.3e-156 557.0 454 61.5
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.1e-156 555.1 404 69.1
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 5.3e-153 545.0 432 62.3
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.9e-151 539.3 450 59.6
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 7.9e-149 531.2 403 64.0
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 3.0e-148 529.3 302 85.4
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 2.0e-144 516.5 336 71.4
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 4.5e-144 515.4 451 57.4
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 7.6e-144 514.6 486 56.4
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 5.0e-135 485.3 404 66.8
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.0e-132 476.1 412 59.2
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.3e-127 460.7 478 48.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.1e-126 457.6 481 51.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 3.0e-124 449.5 470 52.1
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 1.8e-121 440.3 400 60.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.2e-117 427.6 460 45.7
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 9.7e-115 417.9 463 46.7
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.3e-114 417.5 463 46.7
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 1.8e-108 397.1 199 92.5
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.6e-107 393.3 212 84.0
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 4.8e-106 389.0 431 51.0
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 2.5e-102 376.7 213 80.8
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 2.0e-99 367.1 235 77.4
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.3e-98 364.4 199 84.4
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.0e-97 358.6 275 64.0
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 7.8e-96 355.1 339 54.0
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.3e-95 353.6 269 64.3
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.1e-94 351.3 200 79.0
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 9.5e-94 348.2 186 84.9
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.9e-82 309.3 230 60.4
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 1.5e-75 287.7 233 60.5
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.3e-74 284.6 168 75.6
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.4e-73 279.3 241 59.3
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.4e-68 264.6 151 81.5
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 8.9e-68 261.9 252 55.2
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 8.9e-68 261.9 201 61.7
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 3.4e-67 260.0 265 54.0
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.9e-66 256.9 233 52.8
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 2.7e-64 250.4 136 84.6
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 2.9e-58 230.3 344 38.4
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.9e-58 230.3 217 52.5
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.3e-54 216.9 214 53.3
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 7.3e-54 215.7 199 54.3
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 6.2e-53 212.6 183 57.4
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 3.2e-49 200.3 206 51.5
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 5.8e-43 179.5 274 37.2
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 7.1e-41 172.6 96 84.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.4e-36 158.3 90 74.4
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 5.3e-36 156.4 244 39.3
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 6.9e-36 156.0 262 38.9
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.1e-28 132.1 85 70.6
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 5.5e-25 119.8 267 29.6
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.6e-24 118.2 70 71.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-14 85.5 57 75.4
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 2.0e-14 84.7 52 75.0
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.6e-14 84.3 101 44.6
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.2e-13 81.3 340 24.4
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 3.5e-11 73.9 50 70.0
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 1.5e-06 58.5 285 24.2
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.6e-06 57.8 150 28.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 4.4e-06 57.0 110 31.8


User provided reference genes

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