Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 9.9e-81 303.5 167 100.0
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 4.3e-60 235.0 134 83.6
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 5.6e-60 234.6 132 83.3
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 2.4e-58 229.2 129 82.9
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 9.9e-57 223.8 126 83.3
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 1.1e-55 220.3 127 79.5
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 1.4e-55 219.9 126 80.2
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 2.4e-55 219.2 131 75.6
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 3.2e-55 218.8 132 77.3
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 3.2e-55 218.8 130 77.7
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 4.2e-55 218.4 132 76.5
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 4.2e-55 218.4 132 76.5
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 9.3e-55 217.2 126 80.2
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 2.1e-54 216.1 126 77.0
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 2.1e-54 216.1 132 78.0
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 2.7e-54 215.7 131 74.0
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 2.7e-54 215.7 126 78.6
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 3.5e-54 215.3 128 75.8
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 4.6e-54 214.9 126 78.6
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 4.6e-54 214.9 126 77.0
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 7.9e-54 214.2 127 78.0
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.0e-53 213.8 126 79.4
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 1.3e-53 213.4 127 77.2
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 1.3e-53 213.4 131 75.6
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 1.8e-53 213.0 125 77.6
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 1.8e-53 213.0 132 77.3
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 1.8e-53 213.0 132 77.3
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 2.3e-53 212.6 130 75.4
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 5.1e-53 211.5 131 74.0
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 5.1e-53 211.5 139 73.4
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 5.1e-53 211.5 128 77.3
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 6.7e-53 211.1 126 78.6
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 6.7e-53 211.1 126 78.6
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 8.7e-53 210.7 126 78.6
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 8.7e-53 210.7 128 75.8
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 1.1e-52 210.3 128 78.1
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 1.9e-52 209.5 130 76.2
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 1.9e-52 209.5 132 76.5
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 2.5e-52 209.1 126 77.0
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 2.5e-52 209.1 126 76.2
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 2.5e-52 209.1 126 75.4
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 3.3e-52 208.8 126 76.2
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 4.3e-52 208.4 126 77.0
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 5.6e-52 208.0 139 73.4
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 5.6e-52 208.0 139 73.4
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 1.3e-51 206.8 126 75.4
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.3e-51 206.8 139 72.7
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.3e-51 206.8 119 79.8
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.6e-51 206.5 125 76.8
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 1.6e-51 206.5 126 74.6
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 2.1e-51 206.1 139 73.4
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 2.1e-51 206.1 129 72.1
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 2.1e-51 206.1 125 76.8
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 8.2e-51 204.1 126 75.4
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 1.1e-50 203.8 128 74.2
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 3.1e-50 202.2 127 75.6
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 4.0e-50 201.8 128 73.4
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 5.3e-50 201.4 126 77.0
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 6.9e-50 201.1 126 72.2
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 6.9e-50 201.1 126 72.2
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 6.9e-50 201.1 126 72.2
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 6.9e-50 201.1 128 70.3
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 6.9e-50 201.1 133 69.9
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 9.0e-50 200.7 128 72.7
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 9.0e-50 200.7 126 71.4
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 1.2e-49 200.3 126 73.8
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 1.2e-49 200.3 126 71.4
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 1.5e-49 199.9 126 72.2
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 1.5e-49 199.9 128 70.3
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 2.0e-49 199.5 124 73.4
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 2.6e-49 199.1 126 71.4
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 4.5e-49 198.4 167 60.5
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 5.8e-49 198.0 127 77.2
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 2.2e-48 196.1 126 70.6
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 2.2e-48 196.1 128 68.8
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 2.2e-48 196.1 128 68.8
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 2.2e-48 196.1 128 68.8
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 2.2e-48 196.1 128 68.8
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 2.2e-48 196.1 128 68.8
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 2.2e-48 196.1 126 70.6
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 2.9e-48 195.7 128 68.8
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 4.9e-48 194.9 126 70.6
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.9e-47 193.0 126 70.6
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 3.2e-47 192.2 126 65.9
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 3.2e-47 192.2 133 69.2
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 7.1e-47 191.0 128 67.2
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 1.6e-46 189.9 128 68.8
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 3.5e-46 188.7 126 69.0
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 5.1e-45 184.9 113 75.2
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 2.5e-44 182.6 130 61.5
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 7.4e-44 181.0 129 65.9
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 1.3e-43 180.3 126 65.1
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 1.6e-43 179.9 126 63.5
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 5.3e-42 174.9 113 71.7
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 1.3e-40 170.2 127 59.8
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 5.0e-40 168.3 130 60.0
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.0e-40 168.3 127 57.5
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 1.0e-37 160.6 114 64.9
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 8.8e-37 157.5 125 56.8
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 8.8e-37 157.5 124 55.6
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 3.1e-34 149.1 110 66.4
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 1.1e-31 140.6 120 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 2.1e-30 136.3 129 48.8
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 3.6e-30 135.6 130 50.0
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 4.7e-30 135.2 82 79.3
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.1e-29 131.7 153 45.1
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 8.2e-27 124.4 117 49.6
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 1.4e-26 123.6 80 72.5
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 2.5e-23 112.8 70 77.1
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 1.8e-21 106.7 75 66.7
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 1.8e-18 96.7 52 80.8
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 2.0e-17 93.2 57 71.9
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 2.0e-17 93.2 52 75.0
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 5.9e-17 91.7 68 67.6
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 1.3e-16 90.5 53 71.7
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.7e-08 63.5 43 67.4
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 3.8e-08 62.4 43 67.4
Haze_20905 Corylus avellana HOM05D006951 ORTHO05D008594 4.7e-06 55.5 38 65.8


User provided reference genes

Program Settings