Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 0.0e+00 4005.7 2162 100.0
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 0.0e+00 1786.2 2194 56.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 0.0e+00 1748.4 2236 55.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 0.0e+00 1719.1 2241 52.8
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 0.0e+00 1717.6 2106 55.9
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 0.0e+00 1708.3 2144 54.5
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 0.0e+00 1673.7 2160 53.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 0.0e+00 1637.9 2116 53.4
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 0.0e+00 1602.0 2191 51.3
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 0.0e+00 1593.9 2150 52.4
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 1470.3 2170 50.6
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 1464.5 2190 50.2
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 2.5e-269 933.7 2181 39.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 9.3e-256 888.6 2170 38.8
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 7.1e-248 862.4 2221 37.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 2.1e-247 860.9 2188 38.2
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.7e-231 807.4 2161 36.9
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 6.1e-223 779.6 2176 37.6
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 5.2e-222 776.5 953 52.2
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.3e-217 761.9 2149 36.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.2e-217 761.1 2179 35.6
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 1.7e-212 745.0 2171 36.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 6.3e-212 743.0 1975 37.5
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.6e-207 728.4 2183 34.4
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 5.9e-202 709.9 2112 35.0
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-201 708.8 2091 35.1
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.9e-200 704.9 2175 34.6
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.8e-196 691.0 2217 34.5
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 7.0e-195 686.4 1852 36.1
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.5e-194 684.1 2091 34.5
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.9e-193 681.0 2226 34.5
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.6e-191 675.2 2221 34.4
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.7e-191 673.7 2115 35.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.8e-190 671.8 2174 34.8
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 6.8e-190 669.8 1283 44.0
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 9.8e-189 666.0 2244 32.1
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.9e-188 664.5 2183 34.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.0e-185 654.4 1466 39.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 5.0e-185 653.7 2203 34.0
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 8.6e-185 652.9 2062 35.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.6e-184 650.2 2123 33.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-181 641.7 1913 35.4
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.0e-178 631.7 2198 33.8
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.1e-176 625.9 1999 33.6
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 3.6e-175 620.9 1277 41.2
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 8.1e-175 619.8 834 53.6
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.1e-174 617.8 2141 33.2
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 8.4e-164 583.2 1985 33.1
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.4e-163 582.4 2035 34.2
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 4.0e-158 564.3 805 51.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.4e-157 560.8 827 50.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.1e-155 556.2 2153 33.0
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.9e-155 555.4 2139 32.9
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 3.5e-154 551.2 769 53.2
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 5.3e-150 537.3 756 50.9
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.9e-144 518.8 1041 42.7
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 4.8e-143 514.2 992 43.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 6.2e-143 513.8 2044 32.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 7.6e-141 506.9 2035 31.7
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 7.9e-138 496.9 826 48.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.9e-137 494.6 960 43.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 7.4e-136 490.3 2187 30.2
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.8e-135 487.6 2178 30.5
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 6.2e-135 487.3 2135 31.1
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.8e-134 485.7 1920 31.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-134 485.7 1920 31.4
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.5e-133 481.1 966 42.2
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.7e-132 479.2 816 45.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 3.8e-132 478.0 797 44.3
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 4.2e-131 474.6 848 45.2
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.0e-129 469.9 986 41.6
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 4.8e-127 461.1 803 44.1
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.1e-126 459.9 899 43.4
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 4.1e-126 458.0 803 44.1
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 2.9e-124 451.8 803 43.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 2.9e-124 451.8 803 43.7
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-123 449.5 520 59.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 3.2e-123 448.4 925 43.0
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 9.3e-123 446.8 1916 31.7
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.2e-122 446.4 1015 41.0
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.0e-121 443.4 2017 31.3
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.8e-121 442.6 1144 37.2
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.8e-121 442.6 854 45.4
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 3.3e-120 438.3 955 39.7
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.7e-119 436.0 2072 30.5
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 9.1e-118 430.3 1896 30.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.2e-117 429.9 837 44.7
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.7e-116 426.0 2009 28.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 5.7e-112 411.0 1058 37.2
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 6.3e-111 407.5 1200 35.3
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 6.3e-111 407.5 829 42.7
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 6.3e-111 407.5 2140 28.7
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.4e-110 406.4 2235 29.0
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-108 399.8 829 42.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 8.5e-108 397.1 787 39.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.7e-106 391.3 673 42.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 8.0e-106 390.6 706 42.4
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.5e-104 386.3 535 52.5
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.8e-103 381.3 1943 29.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.6e-101 376.3 1939 28.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.0e-101 375.9 1915 29.7
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.5e-99 369.8 2047 27.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.0e-97 363.6 844 40.9
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 4.2e-91 341.7 757 40.7
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 5.5e-91 341.3 529 41.6
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.2e-88 333.6 855 37.5
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 5.2e-81 308.1 1035 33.0
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.5e-80 306.6 849 37.8
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.6e-77 296.6 729 40.6
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 8.6e-76 290.8 595 43.7
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 5.0e-68 265.0 641 34.3
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.9e-67 263.1 375 50.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 8.0e-66 257.7 280 52.5
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.5e-59 236.1 521 38.6
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 2.3e-52 213.0 252 59.5
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.2e-46 192.6 1631 25.9
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 9.2e-46 191.0 544 33.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.0e-44 187.6 693 33.3
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.0e-44 187.6 136 72.1
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.6e-40 172.9 1710 24.8
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.9e-35 156.8 135 58.5
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 5.6e-35 155.2 99 78.8
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.6e-32 146.4 217 41.0
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 2.4e-30 139.8 768 31.0
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 3.8e-23 115.9 402 29.6
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.9e-22 113.6 1618 24.0
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.5e-19 104.0 75 76.0
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.5e-19 103.2 130 43.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-18 100.9 250 32.0
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 6.2e-18 98.6 141 41.8
Psat5g224880 Pisum sativum HOM05D038204 ORTHO05D001752 1.4e-17 97.4 94 54.3
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 4.0e-17 95.9 563 29.3
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.0e-17 95.9 121 43.8
Psat2g029240 Pisum sativum HOM05D002119 ORTHO05D003631 9.0e-17 94.7 94 54.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.2e-16 94.4 94 54.3
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 7.9e-13 81.6 294 29.9
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.3e-09 68.9 468 25.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 9.0e-09 68.2 128 38.3
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.3e-07 64.3 154 31.8


User provided reference genes

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