Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.4e-257 892.5 461 100.0
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-219 765.8 461 85.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.5e-216 756.1 461 84.8
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 5.1e-212 741.1 461 84.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.3e-204 715.7 461 81.3
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-203 712.6 461 81.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 4.3e-203 711.4 461 79.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.5e-200 701.4 460 79.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.3e-199 699.9 465 78.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.1e-195 686.8 462 78.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.8e-193 679.5 460 79.1
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.4e-190 669.8 473 74.6
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.0e-188 662.1 467 74.1
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.5e-187 659.8 475 73.9
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.0e-187 659.4 468 73.7
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.7e-186 655.2 366 89.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 5.3e-185 651.4 471 72.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 3.8e-183 645.2 471 71.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 7.2e-182 641.0 397 82.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.6e-181 639.8 471 71.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.6e-181 638.6 475 71.2
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 3.6e-181 638.6 489 69.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 6.1e-181 637.9 462 73.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.8e-180 636.3 468 72.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.0e-180 635.2 473 71.9
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 5.2e-180 634.8 466 71.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 8.8e-180 634.0 468 71.4
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 8.8e-180 634.0 468 71.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.1e-179 633.6 478 70.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-179 633.3 475 69.7
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.7e-179 631.3 469 70.1
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-178 630.2 468 70.5
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 3.7e-178 628.6 466 71.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 6.3e-178 627.9 473 71.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.4e-177 626.7 469 69.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.1e-177 625.5 474 69.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.1e-177 625.5 481 69.4
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 5.3e-177 624.8 491 68.2
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.3e-177 624.8 484 69.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 7.0e-177 624.4 485 69.1
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 9.1e-177 624.0 468 72.9
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.2e-176 623.6 473 68.7
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.6e-176 623.2 468 72.6
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.5e-176 622.1 467 69.8
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.9e-176 621.3 468 72.6
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.3e-175 620.2 469 69.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.8e-175 618.6 477 71.3
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 5.5e-174 614.8 499 66.3
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 9.4e-174 614.0 471 70.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.0e-173 610.9 459 69.5
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 8.0e-173 610.9 478 68.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.0e-172 609.0 480 69.4
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.0e-172 608.6 523 64.2
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.2e-171 607.1 474 68.1
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 4.4e-171 605.1 464 68.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 5.7e-171 604.7 472 67.2
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 5.7e-171 604.7 472 68.6
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 9.8e-171 604.0 468 68.4
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.2e-170 602.8 449 71.7
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.7e-170 602.1 465 68.2
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.1e-169 600.5 462 67.7
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.1e-169 600.5 513 65.9
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.4e-169 600.1 478 67.2
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.8e-169 599.7 472 68.4
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.1e-169 598.6 462 67.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.4e-169 598.2 473 67.2
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 7.0e-169 597.8 471 67.5
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.5e-168 595.5 471 68.2
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 7.7e-168 594.3 465 69.0
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.2e-167 592.8 472 66.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-167 592.4 465 67.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.9e-167 592.4 503 64.0
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 6.5e-167 591.3 467 66.4
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 8.5e-167 590.9 461 67.2
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.1e-166 590.5 465 66.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-166 590.5 465 66.7
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.5e-166 589.3 465 66.5
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 7.2e-166 587.8 544 61.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 9.4e-166 587.4 467 67.0
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.4e-166 587.4 470 67.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.7e-165 585.9 476 66.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 4.7e-165 585.1 457 67.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.0e-164 582.4 468 66.5
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 4.0e-164 582.0 465 65.6
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 7.5e-163 577.8 390 74.4
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.8e-163 577.4 447 67.1
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-162 577.0 461 66.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 2.8e-162 575.9 409 73.6
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.9e-162 575.1 503 62.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-161 573.2 459 67.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-161 572.8 462 67.1
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 2.4e-161 572.8 476 65.3
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.4e-161 572.8 478 65.1
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 7.0e-161 571.2 474 65.8
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.2e-161 570.9 463 67.4
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.7e-160 569.3 467 65.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 7.7e-160 567.8 522 60.5
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.7e-159 566.6 467 66.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 6.6e-159 564.7 431 70.5
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.1e-158 563.9 368 75.5
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.5e-158 562.8 461 64.6
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 4.3e-158 562.0 465 63.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 4.7e-157 558.5 474 64.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 1.4e-156 557.0 484 63.8
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-153 547.4 467 63.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.8e-153 546.6 450 64.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 9.2e-153 544.3 476 62.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-152 543.9 463 64.6
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.0e-152 543.1 463 64.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 5.0e-151 538.5 481 62.6
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 4.3e-150 535.4 480 61.0
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 7.3e-150 534.6 470 62.3
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.2e-149 533.9 446 64.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.6e-149 533.5 494 59.1
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.8e-149 532.7 332 77.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.6e-149 532.3 399 71.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 4.4e-147 525.4 417 66.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 7.5e-147 524.6 461 63.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.7e-146 522.3 491 59.5
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.4e-146 521.5 503 59.4
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 4.1e-145 518.8 436 64.7
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 7.8e-144 514.6 286 87.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.7e-141 505.4 454 58.1
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.4e-140 503.8 462 61.0
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.4e-140 503.8 279 86.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.3e-135 486.5 466 59.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.3e-135 486.5 331 71.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 3.3e-134 482.6 501 55.5
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.4e-132 477.2 465 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.2e-130 469.9 329 68.7
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.0e-127 461.1 444 56.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.2e-125 451.8 423 60.0
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.4e-123 446.0 334 67.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.2e-121 439.5 422 59.0
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.4e-121 438.7 563 49.9
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.5e-118 429.9 272 73.5
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.3e-118 428.3 441 57.1
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.5e-115 419.1 356 61.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.9e-113 413.7 470 54.7
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-110 404.4 434 55.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.2e-101 372.1 339 57.8
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.7e-98 364.0 388 53.4
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.1e-97 358.6 287 64.1
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.0e-95 354.8 410 48.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 4.5e-75 286.2 260 55.8
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.9e-74 283.5 470 42.1
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.7e-58 231.1 466 39.3
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.1e-52 211.8 382 36.6
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 5.2e-39 166.4 120 71.7
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.3e-37 161.8 242 45.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.8e-36 157.9 166 54.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 7.5e-30 136.0 81 79.0
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 9.2e-28 129.0 179 49.7
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.7e-27 127.5 139 53.2
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.3e-21 105.9 195 41.0
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.5e-19 100.5 112 51.8
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 6.0e-19 99.8 189 41.3
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 6.0e-19 99.8 112 50.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.7e-13 81.6 201 38.8
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 6.0e-11 73.2 77 61.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.2e-08 65.5 205 27.3
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 5.2e-07 60.1 44 59.1


User provided reference genes

Program Settings