Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 5.0e-184 647.9 394 100.0
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 2.3e-80 303.5 411 50.1
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 8.9e-80 301.6 420 48.3
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 2.7e-76 290.0 346 52.9
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 7.8e-76 288.5 419 48.0
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 5.0e-75 285.8 424 45.8
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 4.3e-74 282.7 331 53.8
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 2.1e-73 280.4 324 53.4
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 2.8e-73 280.0 341 53.4
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 1.8e-72 277.3 417 46.8
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 4.4e-71 272.7 333 51.4
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 2.4e-69 266.9 344 50.0
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 8.6e-67 258.5 406 44.8
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 6.6e-59 232.3 334 46.7
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.2e-57 228.0 347 43.8
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 2.1e-57 227.3 348 42.5
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 2.8e-57 226.9 341 43.4
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 8.1e-57 225.3 348 42.5
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 1.5e-55 221.1 344 41.9
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 4.4e-55 219.5 338 42.3
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 5.8e-55 219.2 338 42.3
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 4.1e-53 213.0 332 44.6
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 2.1e-52 210.7 350 42.3
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 3.5e-52 209.9 350 41.7
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 7.8e-52 208.8 343 42.3
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.5e-50 204.5 340 40.9
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 4.3e-50 203.0 415 37.6
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 7.3e-50 202.2 340 40.3
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 7.3e-50 202.2 424 38.4
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 9.5e-50 201.8 401 38.7
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 1.2e-49 201.4 340 41.2
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 1.2e-49 201.4 416 37.7
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 3.6e-49 199.9 346 40.5
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.4e-48 197.2 417 36.2
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 2.4e-48 197.2 347 38.9
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 3.1e-48 196.8 397 35.5
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 5.2e-48 196.1 327 40.4
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 8.9e-48 195.3 367 39.2
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.5e-47 194.5 415 36.6
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.0e-47 194.1 368 38.0
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 4.4e-47 193.0 348 38.5
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 5.8e-47 192.6 336 37.2
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 7.6e-47 192.2 400 35.5
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 1.7e-46 191.0 331 39.0
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 4.9e-46 189.5 342 40.6
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 6.4e-46 189.1 354 36.4
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 8.4e-46 188.7 365 37.8
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 1.1e-45 188.3 345 38.8
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 1.1e-45 188.3 347 37.5
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.9e-45 187.6 341 39.3
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 4.2e-45 186.4 447 34.5
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 5.4e-45 186.0 386 36.5
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 9.2e-45 185.3 345 37.7
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 9.2e-45 185.3 353 38.2
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 2.7e-44 183.7 330 40.0
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 2.7e-44 183.7 346 35.8
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 3.5e-44 183.3 348 37.9
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 7.8e-44 182.2 364 37.4
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 1.0e-43 181.8 346 37.9
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 1.7e-43 181.0 339 38.1
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 3.0e-43 180.3 329 39.2
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 5.1e-43 179.5 360 35.6
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 6.6e-43 179.1 354 37.0
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 1.9e-42 177.6 352 37.5
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 3.3e-42 176.8 342 36.3
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 4.3e-42 176.4 262 41.6
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 7.3e-42 175.6 360 38.1
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 9.6e-42 175.3 401 33.9
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 1.6e-41 174.5 226 49.1
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.8e-41 173.7 356 37.1
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 3.6e-41 173.3 351 36.5
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 6.2e-41 172.6 227 45.8
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 6.2e-41 172.6 338 34.3
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 1.1e-40 171.8 364 35.2
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 1.4e-40 171.4 357 35.9
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.1e-40 170.2 332 38.0
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 3.1e-40 170.2 331 36.9
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.2e-39 168.3 337 39.2
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 1.5e-39 167.9 383 33.4
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 1.5e-39 167.9 442 31.4
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 2.0e-39 167.5 344 34.6
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 2.0e-39 167.5 330 37.3
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 2.0e-39 167.5 405 33.6
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 2.6e-39 167.2 349 36.1
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 4.4e-39 166.4 330 37.3
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 7.6e-39 165.6 556 29.3
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 9.9e-39 165.2 330 37.3
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 1.7e-38 164.5 327 39.8
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 2.9e-38 163.7 312 36.9
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 2.7e-36 157.1 298 38.3
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 4.6e-36 156.4 388 34.3
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 6.0e-36 156.0 206 46.1
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 6.0e-36 156.0 329 37.1
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 7.8e-36 155.6 389 33.7
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.3e-35 154.8 266 41.4
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 1.9e-34 151.0 152 55.9
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 3.6e-33 146.7 465 29.5
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.2e-33 146.0 330 34.5
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 1.4e-32 144.8 350 31.4
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.8e-32 144.4 374 31.6
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.9e-32 142.5 355 32.1
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 3.4e-31 140.2 347 34.0
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 2.9e-30 137.1 267 39.7
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 3.8e-30 136.7 225 39.6
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 2.4e-29 134.0 172 45.9
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 2.1e-28 131.0 330 33.6
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 1.5e-26 124.8 373 30.0
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 2.1e-25 120.9 262 35.1
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 6.4e-22 109.4 216 36.6
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 3.5e-20 103.6 237 35.9
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 3.0e-19 100.5 301 26.6
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 8.7e-19 99.0 317 29.0
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 5.8e-15 86.3 171 34.5
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 1.6e-12 78.2 358 25.7
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 1.9e-10 71.2 103 48.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 4.3e-10 70.1 156 33.3
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 5.7e-10 69.7 336 24.7
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 9.0e-08 62.4 53 60.4


User provided reference genes

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