Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.2e-63 245.4 117 100.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.6e-53 212.6 115 87.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.6e-53 211.5 117 84.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.0e-51 205.7 117 82.9
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.0e-48 195.7 115 80.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.1e-45 185.7 119 75.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.6e-45 184.9 117 78.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.0e-44 183.3 119 75.6
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.0e-44 183.3 117 76.1
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 7.5e-43 177.2 117 69.2
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.8e-41 172.6 118 73.7
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.2e-40 169.9 117 65.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.0e-40 169.1 117 65.8
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.3e-39 165.6 117 65.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 2.9e-39 165.2 117 65.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.5e-38 162.9 118 64.4
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.5e-38 162.9 117 64.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.9e-38 162.5 118 63.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 5.5e-38 161.0 117 64.1
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 7.2e-38 160.6 117 64.1
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.6e-37 158.3 117 63.2
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.0e-36 156.8 116 59.5
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 7.5e-35 150.6 117 59.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.3e-34 147.5 117 57.3
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 8.3e-34 147.1 121 60.3
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.4e-33 146.4 125 55.2
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.0e-33 144.1 117 55.6
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 7.0e-33 144.1 121 57.9
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.7e-32 142.1 121 58.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.7e-32 142.1 121 57.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.5e-32 141.7 121 57.9
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 7.8e-32 140.6 121 56.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 7.8e-32 140.6 124 51.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 7.8e-32 140.6 124 51.6
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.0e-31 140.2 120 56.7
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.3e-31 139.8 120 55.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.8e-31 138.3 120 55.8
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 5.0e-31 137.9 120 55.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 5.0e-31 137.9 120 55.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 5.0e-31 137.9 120 55.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 5.0e-31 137.9 120 55.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 6.6e-31 137.5 120 55.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 6.6e-31 137.5 120 55.8
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 8.6e-31 137.1 120 55.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.5e-30 136.3 120 55.0
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.9e-30 136.0 120 55.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.9e-30 136.0 120 55.0
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.9e-30 136.0 120 55.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 5.6e-30 134.4 120 54.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 5.6e-30 134.4 120 54.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 7.3e-30 134.0 120 53.3
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 7.3e-30 134.0 118 54.2
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 7.3e-30 134.0 125 52.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.2e-29 133.3 120 53.3
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.6e-29 132.9 125 52.0
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.1e-29 132.5 120 54.2
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.1e-29 132.5 123 48.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.8e-29 132.1 115 55.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 2.8e-29 132.1 124 50.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 53.3
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 3.6e-29 131.7 122 54.1
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 4.7e-29 131.3 120 52.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 6.1e-29 131.0 118 51.7
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 8.0e-29 130.6 118 52.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 8.0e-29 130.6 120 51.7
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 8.0e-29 130.6 124 48.4
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 55.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 51.7
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 52.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.3e-28 129.0 118 50.0
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 3.0e-28 128.6 121 52.9
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 52.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 52.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.5e-27 126.3 118 50.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.5e-27 126.3 121 50.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 50.0
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 50.0
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 50.0
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.5e-27 126.3 115 52.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 51.7
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.6e-27 125.6 113 51.3
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.6e-27 125.6 120 50.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.6e-27 125.6 120 50.0
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.4e-27 124.8 122 50.0
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 7.5e-27 124.0 117 53.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.3e-26 123.2 118 50.8
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 48.3
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.7e-26 122.9 118 48.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 2.9e-26 122.1 125 48.0
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 3.7e-26 121.7 125 47.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.6e-24 116.3 113 47.8
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 3.5e-24 115.2 116 46.6
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.7e-23 112.8 118 44.1
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.3e-23 112.5 124 44.4
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 8.6e-23 110.5 113 46.0
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.1e-22 110.2 116 45.7
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.5e-22 109.8 79 64.6
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.5e-22 109.8 118 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 3.3e-22 108.6 119 43.7
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 7.3e-22 107.5 126 42.9
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 8.0e-21 104.0 106 48.1
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.1e-20 102.1 96 49.0
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.5e-19 99.8 94 48.9
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.6e-19 99.0 103 50.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-18 96.7 77 57.1
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.2e-18 95.9 53 79.2
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.2e-17 92.0 78 52.6
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 3.2e-17 92.0 65 70.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 3.2e-17 92.0 69 66.7
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 5.4e-17 91.3 65 70.8
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 9.2e-17 90.5 84 51.2
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 2.1e-16 89.4 69 65.2
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.1e-16 89.4 69 62.3
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.1e-16 89.4 155 31.6
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.7e-16 89.0 58 74.1
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.8e-16 87.4 122 37.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.7e-15 86.3 69 56.5
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.5e-14 83.2 106 38.7
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.9e-14 82.8 93 45.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.3e-14 81.6 67 56.7
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.7e-13 78.2 61 57.4
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 8.1e-13 77.4 122 30.3
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-12 76.6 55 65.5
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 5.8e-11 71.2 55 60.0
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 7.5e-11 70.9 52 55.8
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.9e-11 70.5 76 46.1
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-10 70.1 87 44.8
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.9e-10 68.9 53 58.5
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 9.2e-09 63.9 58 46.6
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 2.7e-08 62.4 128 29.7
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.6e-08 61.6 108 31.5
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 4.6e-08 61.6 50 48.0
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 7.8e-08 60.8 40 62.5
arahy.Tifrunner.gnm1.ann1.46RTPJ Arachis hypogaea HOM05D005168 ORTHO05D006358 1.3e-07 60.1 42 66.7
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.3e-07 60.1 109 33.9
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.0e-07 58.9 69 42.0
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 3.9e-07 58.5 52 51.9
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 5.1e-07 58.2 110 34.5
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 5.1e-07 58.2 112 34.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 6.6e-07 57.8 50 52.0
Glyma.20G021400 Glycine max HOM05D001329 ORTHO05D006358 6.6e-07 57.8 43 65.1
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.5e-06 56.6 72 43.1
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.9e-06 56.2 77 36.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 1.9e-06 56.2 114 32.5
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 5.6e-06 54.7 114 32.5
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 5.6e-06 54.7 114 30.7
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 9.5e-06 53.9 114 30.7
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.5e-06 53.9 121 34.7


User provided reference genes

Program Settings