Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 4.4e-104 382.1 334 100.0
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 5.8e-64 248.8 334 76.0
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 1.5e-56 224.2 333 72.1
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 2.6e-56 223.4 329 72.3
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 4.1e-54 216.1 336 65.2
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 2.1e-53 213.8 334 70.4
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 3.5e-53 213.0 329 69.3
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 4.0e-49 199.5 338 69.2
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 3.4e-48 196.4 340 61.8
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 2.2e-47 193.7 347 60.2
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 1.1e-46 191.4 338 67.8
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 4.9e-39 166.0 207 50.2
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 3.9e-36 156.4 340 66.2
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 3.1e-33 146.7 340 65.6
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 3.1e-33 146.7 269 70.3
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 7.6e-32 142.1 317 61.2
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 6.4e-31 139.0 266 72.6
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.4e-30 137.9 229 74.2
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 1.9e-30 137.5 347 57.3
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 5.5e-30 136.0 323 54.8
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 2.1e-29 134.0 310 66.5
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 2.1e-29 134.0 310 66.5
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 2.1e-29 134.0 259 62.5
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 7.9e-29 132.1 229 71.2
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 1.3e-28 131.3 207 43.0
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 8.7e-28 128.6 258 70.9
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 2.5e-27 127.1 294 65.3
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 5.6e-27 125.9 273 57.9
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 7.4e-27 125.6 272 57.4
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 7.4e-27 125.6 277 59.9
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 9.6e-27 125.2 260 63.1
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 1.3e-26 124.8 299 58.9
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 1.6e-26 124.4 273 57.5
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 1.6e-26 124.4 297 64.0
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 3.7e-26 123.2 312 59.6
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 8.1e-26 122.1 334 50.3
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 1.8e-25 120.9 285 53.7
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 1.8e-25 120.9 272 57.0
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 2.4e-25 120.6 320 54.4
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 3.1e-25 120.2 208 40.4
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 4.0e-25 119.8 129 51.9
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 6.9e-25 119.0 224 77.7
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 9.0e-25 118.6 273 59.7
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 9.0e-25 118.6 273 59.7
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 1.2e-24 118.2 180 42.8
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 2.0e-24 117.5 265 62.3
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 5.8e-24 115.9 334 60.5
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 1.3e-23 114.8 327 57.5
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 1.3e-23 114.8 223 72.2
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 1.3e-23 114.8 337 57.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 1.7e-23 114.4 268 57.8
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 2.2e-23 114.0 316 53.2
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 2.2e-23 114.0 335 53.1
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 2.9e-23 113.6 133 54.9
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 3.8e-23 113.2 276 37.0
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 6.5e-23 112.5 284 61.3
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 6.5e-23 112.5 260 66.5
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.1e-22 111.7 322 57.5
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.9e-22 110.9 266 54.1
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.5e-22 109.4 295 57.6
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 7.1e-22 109.0 305 52.1
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 9.3e-22 108.6 254 64.6
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 9.3e-22 108.6 291 62.9
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 9.3e-22 108.6 257 65.0
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 9.3e-22 108.6 257 65.4
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 9.3e-22 108.6 216 44.4
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 1.6e-21 107.8 168 43.5
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 2.1e-21 107.5 158 45.6
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 2.7e-21 107.1 202 76.2
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 3.5e-21 106.7 103 60.2
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 4.6e-21 106.3 349 35.2
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 4.6e-21 106.3 205 42.9
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 4.6e-21 106.3 205 42.9
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 4.6e-21 106.3 205 42.9
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 6.0e-21 105.9 226 69.5
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.3e-20 104.8 209 45.9
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.3e-20 104.0 212 42.5
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 5.1e-20 102.8 203 80.3
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 8.7e-20 102.1 225 71.6
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.1e-19 101.7 227 66.5
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.5e-19 101.3 225 70.7
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 1.5e-19 101.3 269 65.4
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 7.4e-19 99.0 259 62.9
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.6e-18 97.8 260 57.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 1.6e-18 97.8 200 77.0
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 1.6e-18 97.8 205 73.2
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 1.6e-18 97.8 293 66.6
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 3.7e-18 96.7 210 72.4
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 4.8e-18 96.3 224 71.4
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 6.3e-18 95.9 68 72.1
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 3.1e-17 93.6 85 61.2
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.2e-16 91.7 188 79.3
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.5e-16 91.3 210 68.1
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-16 91.3 192 37.5
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 3.4e-16 90.1 259 71.4
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 1.0e-15 88.6 258 57.8
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 1.7e-15 87.8 254 63.0
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 8.5e-15 85.5 329 59.9
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 6.1e-13 79.3 107 47.7
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 1.5e-11 74.7 225 71.6
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 4.8e-10 69.7 96 39.6
Actinidia28462 Actinidia chinensis HOM05D007469 ORTHO05D003360 4.5e-08 63.2 53 62.3
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 1.4e-06 58.2 40 70.0
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 5.5e-06 56.2 64 43.8
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 5.5e-06 56.2 64 43.8
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 5.5e-06 56.2 64 43.8
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 9.4e-06 55.5 63 47.6


User provided reference genes

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