Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.6e-61 239.6 150 100.0
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.3e-28 130.2 153 53.6
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.7e-26 122.1 156 50.0
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.0e-25 118.6 162 50.6
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 5.3e-25 118.2 149 50.3
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.0e-24 116.3 157 47.1
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.7e-23 113.2 159 45.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 2.2e-23 112.8 148 51.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.6e-21 106.7 151 48.3
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 3.0e-20 102.4 156 44.2
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.2e-18 96.3 139 43.2
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.9e-17 91.3 151 41.7
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.5e-16 90.1 154 53.9
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 5.9e-16 88.2 105 53.3
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.0e-15 87.4 154 40.3
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.2e-15 86.3 151 42.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.5e-14 81.6 133 41.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 7.2e-14 81.3 148 39.9
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.2e-14 81.3 117 47.9
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.2e-13 80.5 181 35.9
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.2e-13 80.5 154 39.6
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.1e-13 79.7 63 69.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.7e-13 79.3 58 70.7
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.1e-13 78.2 69 62.3
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.1e-13 78.2 70 62.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.4e-12 77.0 142 39.4
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.8e-12 76.6 158 35.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.3e-12 76.3 142 42.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.3e-12 76.3 144 38.9
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.0e-12 75.9 137 40.9
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.0e-12 75.9 132 40.2
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.1e-12 75.1 133 40.6
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-11 73.9 139 38.8
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 2.5e-11 72.8 143 37.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.7e-11 71.6 144 41.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 5.7e-11 71.6 66 62.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.7e-11 71.6 141 40.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.7e-11 70.9 141 38.3
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.3e-10 70.5 134 38.8
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.7e-10 70.1 69 55.1
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.2e-10 69.7 142 38.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.8e-10 69.3 132 37.9
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.8e-10 68.6 140 37.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 8.2e-10 67.8 66 60.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 8.2e-10 67.8 153 34.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 8.2e-10 67.8 142 33.8
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.4e-09 67.0 67 56.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.8e-09 66.6 148 32.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.8e-09 66.6 76 53.9
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.4e-09 66.2 58 62.1
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.1e-09 65.9 49 65.3
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.1e-09 65.5 68 52.9
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.1e-09 65.5 112 42.0
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.1e-09 65.5 68 55.9
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.3e-09 65.1 79 50.6
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 5.3e-09 65.1 68 58.8
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.5e-08 63.5 56 62.5
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 2.6e-08 62.8 104 41.3
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.5e-08 62.0 90 44.4
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 5.9e-08 61.6 139 31.7
Psat3g078880 Pisum sativum HOM05D002974 ORTHO05D002992 5.9e-08 61.6 104 40.4
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 7.7e-08 61.2 65 60.0
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 7.7e-08 61.2 87 44.8
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 7.7e-08 61.2 88 44.3
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 7.7e-08 61.2 88 44.3
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 7.7e-08 61.2 87 44.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 7.7e-08 61.2 80 50.0
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-07 60.8 88 44.3
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 1.3e-07 60.5 51 60.8
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.3e-07 60.5 70 50.0
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.3e-07 60.5 80 45.0
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.3e-07 60.5 64 57.8
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.3e-07 60.5 49 67.3
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-07 60.1 53 60.4
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.7e-07 60.1 56 58.9
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.7e-07 60.1 138 35.5
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.7e-07 60.1 138 35.5
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.7e-07 60.1 74 50.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.7e-07 60.1 135 36.3
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 2.2e-07 59.7 50 62.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.2e-07 59.7 84 51.2
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 2.2e-07 59.7 43 67.4
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 2.9e-07 59.3 84 42.9
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 3.8e-07 58.9 64 53.1
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 3.8e-07 58.9 74 48.6
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 3.8e-07 58.9 74 48.6
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 3.8e-07 58.9 74 48.6
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 3.8e-07 58.9 56 58.9
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.8e-07 58.9 67 53.7
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.0e-07 58.5 62 51.6
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 5.0e-07 58.5 74 48.6
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 5.0e-07 58.5 74 48.6
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 5.0e-07 58.5 80 48.8
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 5.0e-07 58.5 118 39.8
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 6.5e-07 58.2 104 38.5
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.5e-07 58.2 70 55.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.5e-07 58.2 50 64.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.5e-07 58.2 136 33.8
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 6.5e-07 58.2 50 64.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 6.5e-07 58.2 67 53.7
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 8.5e-07 57.8 50 60.0
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 8.5e-07 57.8 50 60.0
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 8.5e-07 57.8 82 50.0
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.5e-07 57.8 43 67.4
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.5e-07 57.8 87 43.7
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 61.5
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-06 57.4 64 51.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-06 57.4 64 51.6
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.1e-06 57.4 53 60.4
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 1.1e-06 57.4 60 55.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-06 57.0 51 58.8
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 48 62.5
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 86 43.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.9e-06 56.6 52 59.6
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 74 48.6
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 98 40.8
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 1.9e-06 56.6 67 52.2
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.9e-06 56.6 78 46.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.9e-06 56.6 46 60.9
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.9e-06 56.6 84 50.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.9e-06 56.6 43 65.1
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 1.9e-06 56.6 60 51.7
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 1.9e-06 56.6 60 51.7
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 1.9e-06 56.6 122 34.4
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.5e-06 56.2 57 52.6
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 2.5e-06 56.2 86 46.5
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 3.2e-06 55.8 67 52.2
Migut.K00136 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.2e-06 55.8 70 48.6
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.2e-06 55.8 57 52.6
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.2e-06 55.8 57 52.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.2e-06 55.8 43 65.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 3.2e-06 55.8 49 57.1
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 3.2e-06 55.8 57 56.1
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.2e-06 55.5 53 56.6
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.2e-06 55.5 74 47.3
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 4.2e-06 55.5 99 41.4
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.2e-06 55.5 57 52.6
Zm00001eb352450 Zea mays HOM05D002974 ORTHO05D002992 5.5e-06 55.1 119 31.9
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 7.2e-06 54.7 47 63.8
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 7.2e-06 54.7 47 63.8
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.2e-06 54.7 43 62.8
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.2e-06 54.7 53 52.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 9.4e-06 54.3 74 50.0
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 9.4e-06 54.3 67 49.3
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 9.4e-06 54.3 67 49.3
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 9.4e-06 54.3 43 65.1
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 9.4e-06 54.3 65 53.8


User provided reference genes

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