Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 4.2e-60 234.6 125 100.0
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 1.2e-46 189.9 123 82.1
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 6.5e-45 184.1 122 81.1
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 3.2e-44 181.8 120 78.3
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 4.2e-44 181.4 124 75.8
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 1.4e-42 176.4 115 79.1
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 1.2e-41 173.3 121 79.3
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 1.2e-41 173.3 118 77.1
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 1.3e-40 169.9 118 75.4
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 1.7e-40 169.5 125 74.4
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 2.2e-40 169.1 120 72.5
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 7.0e-39 164.1 122 75.4
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 2.0e-38 162.5 125 70.4
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 8.6e-37 157.1 123 68.3
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 2.5e-36 155.6 113 69.0
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 5.5e-36 154.5 113 69.0
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 2.8e-35 152.1 113 70.8
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 3.6e-35 151.8 113 70.8
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 4.7e-35 151.4 115 68.7
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 6.1e-35 151.0 113 68.1
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 1.0e-34 150.2 120 65.0
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 1.4e-34 149.8 113 68.1
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 1.8e-34 149.4 113 68.1
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 1.8e-34 149.4 113 69.0
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 2.3e-34 149.1 114 67.5
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 3.0e-34 148.7 130 63.8
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 3.0e-34 148.7 112 67.9
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 4.0e-34 148.3 117 67.5
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 4.0e-34 148.3 123 65.0
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 4.0e-34 148.3 121 63.6
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 4.0e-34 148.3 115 68.7
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 4.0e-34 148.3 115 68.7
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 6.8e-34 147.5 114 65.8
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 6.8e-34 147.5 108 69.4
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 6.8e-34 147.5 127 65.4
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 8.9e-34 147.1 115 67.8
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 1.2e-33 146.7 111 67.6
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 2.0e-33 146.0 113 66.4
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 2.0e-33 146.0 115 65.2
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 3.4e-33 145.2 123 62.6
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 4.4e-33 144.8 113 66.4
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 4.4e-33 144.8 112 68.8
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 5.7e-33 144.4 126 63.5
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 7.5e-33 144.1 115 62.6
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 9.8e-33 143.7 115 65.2
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 1.3e-32 143.3 115 63.5
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.3e-32 143.3 120 63.3
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.3e-32 143.3 120 63.3
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 1.7e-32 142.9 115 62.6
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.7e-32 142.9 108 66.7
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 2.2e-32 142.5 127 62.2
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 2.8e-32 142.1 115 64.3
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 6.3e-32 141.0 110 68.2
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 1.4e-31 139.8 120 61.7
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 1.4e-31 139.8 114 64.0
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.4e-31 139.8 116 62.9
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.8e-31 139.4 109 67.0
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 2.4e-31 139.0 121 59.5
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 3.1e-31 138.7 117 65.0
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 3.1e-31 138.7 117 65.0
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 3.1e-31 138.7 118 62.7
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 4.1e-31 138.3 120 60.8
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 4.1e-31 138.3 113 62.8
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 5.4e-31 137.9 116 63.8
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 9.2e-31 137.1 122 61.5
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.2e-30 136.7 128 59.4
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 1.2e-30 136.7 116 61.2
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 1.6e-30 136.3 117 64.1
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 1.6e-30 136.3 117 64.1
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 1.6e-30 136.3 117 64.1
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 2.7e-30 135.6 117 63.2
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 2.7e-30 135.6 121 58.7
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 2.7e-30 135.6 121 57.9
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 5.9e-30 134.4 117 62.4
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 5.9e-30 134.4 122 60.7
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 5.9e-30 134.4 117 62.4
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 7.8e-30 134.0 117 60.7
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 7.8e-30 134.0 109 66.1
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 1.7e-29 132.9 110 63.6
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 3.8e-29 131.7 113 61.9
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 3.8e-29 131.7 128 56.2
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 1.9e-28 129.4 145 49.7
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 2.5e-28 129.0 149 49.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 4.3e-28 128.3 108 62.0
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 5.6e-28 127.9 124 58.9
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 1.6e-27 126.3 120 57.5
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 1.8e-26 122.9 113 55.8
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 8.9e-26 120.6 107 57.9
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 2.6e-25 119.0 113 55.8
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 1.3e-24 116.7 84 69.0
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 1.7e-24 116.3 137 50.4
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 8.3e-24 114.0 86 66.3
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 5.4e-23 111.3 86 66.3
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 7.0e-23 110.9 86 66.3
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 7.0e-23 110.9 83 67.5
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 1.2e-22 110.2 122 52.5
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 1.6e-22 109.8 106 55.7
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.7e-22 109.0 86 65.1
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.7e-22 109.0 86 65.1
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 7.8e-22 107.5 100 54.0
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 2.3e-21 105.9 113 56.6
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 5.0e-21 104.8 110 52.7
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.1e-18 97.1 81 60.5
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 4.0e-18 95.1 66 69.7
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 4.4e-17 91.7 83 61.4
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 5.8e-17 91.3 78 60.3
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 4.9e-16 88.2 76 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 1.6e-14 83.2 108 40.7
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 2.1e-14 82.8 66 62.1
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 3.5e-14 82.0 114 41.2
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 2.5e-12 75.9 64 59.4
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 1.7e-08 63.2 130 35.4
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 1.4e-07 60.1 38 73.7
COL.COLO4_37252 Corchorus olitorius HOM05D007048 ORTHO05D008811 7.8e-06 54.3 74 45.9


User provided reference genes

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