Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 3.4e-118 428.3 212 100.0
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.6e-80 303.1 218 73.4
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.4e-79 300.1 204 75.5
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.0e-74 282.3 214 71.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.9e-73 279.6 214 70.6
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 2.5e-73 279.3 212 70.3
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 7.4e-73 277.7 204 71.1
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.2e-69 266.2 225 64.0
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.2e-69 266.2 213 66.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.8e-69 265.4 212 67.9
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 6.5e-69 264.6 225 64.4
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 8.4e-69 264.2 222 64.0
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 2.5e-68 262.7 214 67.8
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.5e-68 262.7 225 64.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 4.2e-68 261.9 212 66.0
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 5.5e-68 261.5 223 63.2
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 7.9e-67 257.7 197 70.1
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.8e-66 256.5 223 63.2
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.8e-66 256.5 223 63.2
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 6.7e-66 254.6 226 61.1
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.3e-65 252.3 228 61.0
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 5.7e-65 251.5 243 58.8
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 7.4e-65 251.1 233 60.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 4.8e-64 248.4 207 65.7
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.4e-63 246.9 233 57.5
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.4e-63 246.9 229 59.4
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.8e-63 246.5 227 59.9
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.8e-63 246.5 227 59.9
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.4e-63 246.1 223 61.0
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.1e-63 245.7 223 62.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.3e-63 245.0 225 60.4
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.2e-62 243.8 233 56.7
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 2.0e-62 243.0 224 60.3
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.6e-62 242.7 213 61.5
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 3.4e-62 242.3 225 59.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.8e-62 241.5 224 59.4
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 5.8e-62 241.5 224 59.8
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.8e-62 241.5 190 67.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.3e-61 240.4 237 59.5
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.7e-61 240.0 230 59.1
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 1.7e-61 240.0 246 56.1
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.2e-61 239.6 230 54.8
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 2.2e-61 239.6 220 60.5
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 5.0e-61 238.4 225 59.1
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.9e-60 236.5 226 59.7
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.9e-60 236.5 240 58.3
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.9e-60 236.5 230 54.3
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.2e-60 235.3 225 59.6
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 4.2e-60 235.3 234 57.3
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.5e-60 235.0 222 59.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.2e-59 233.8 230 55.2
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.0e-58 230.7 227 57.3
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.3e-58 230.3 213 59.2
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.8e-58 229.9 235 56.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 2.3e-58 229.6 228 56.6
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.3e-58 229.6 227 59.0
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.3e-58 229.6 225 56.4
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 5.1e-58 228.4 226 57.5
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 6.7e-58 228.0 218 59.6
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 6.7e-58 228.0 218 59.6
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 6.7e-58 228.0 229 57.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 8.7e-58 227.6 233 55.8
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 8.7e-58 227.6 222 56.8
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 8.7e-58 227.6 231 55.4
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.1e-57 227.3 188 62.2
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.5e-57 226.9 224 57.1
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.9e-57 226.5 226 57.1
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 2.5e-57 226.1 233 57.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 4.3e-57 225.3 218 56.4
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 7.4e-57 224.6 210 58.6
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 7.4e-57 224.6 229 56.8
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 7.4e-57 224.6 255 52.5
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 7.4e-57 224.6 220 55.5
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 7.4e-57 224.6 228 57.0
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.7e-57 224.2 228 54.8
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.3e-56 223.8 228 56.1
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.2e-56 223.0 228 56.6
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.2e-56 223.0 220 56.4
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 4.8e-56 221.9 216 57.4
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 6.3e-56 221.5 229 55.9
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 6.3e-56 221.5 224 52.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.1e-55 220.7 229 54.6
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.4e-55 220.3 202 59.9
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.4e-55 220.3 242 52.9
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.4e-55 220.3 218 54.6
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.8e-55 219.9 224 55.8
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 2.4e-55 219.5 232 55.2
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.4e-55 219.5 177 63.8
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 3.1e-55 219.2 158 68.4
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 4.1e-55 218.8 198 60.1
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 6.9e-55 218.0 208 56.2
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 6.9e-55 218.0 226 53.5
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.2e-54 217.2 237 49.8
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.5e-54 216.9 155 67.1
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.5e-54 216.9 229 55.9
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 2.6e-54 216.1 222 56.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 7.7e-54 214.5 236 57.2
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.2e-53 213.0 225 51.1
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 3.8e-53 212.2 230 55.7
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.8e-53 212.2 229 51.1
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.9e-52 209.9 212 55.2
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.9e-52 209.9 225 50.2
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.9e-52 209.9 227 51.5
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 5.5e-52 208.4 236 53.0
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 7.2e-52 208.0 231 54.1
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 7.2e-52 208.0 220 51.4
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 3.6e-51 205.7 231 53.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.6e-51 205.3 233 52.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 7.9e-51 204.5 234 52.6
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 1.4e-50 203.8 223 53.4
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-50 203.4 236 52.1
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 5.1e-50 201.8 223 53.8
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.1e-50 201.8 242 50.8
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 5.1e-50 201.8 219 51.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.1e-49 200.7 219 51.1
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.5e-49 200.3 235 51.1
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.7e-49 198.4 237 51.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.7e-48 196.8 154 62.3
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.8e-48 195.3 204 54.9
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.8e-48 195.3 204 54.4
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.1e-47 194.1 222 49.5
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.8e-47 193.4 218 51.8
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.8e-47 193.4 167 55.7
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.8e-47 193.4 204 54.4
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 2.0e-46 189.9 179 60.9
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.6e-46 189.5 246 45.1
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.7e-45 186.8 214 50.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.7e-45 186.8 131 71.0
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 2.9e-45 186.0 163 57.7
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 9.4e-44 181.0 223 50.7
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 2.7e-43 179.5 133 66.2
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 2.7e-43 179.5 233 45.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.8e-42 176.8 242 43.4
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.9e-42 175.6 148 59.5
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.7e-41 171.8 228 44.3
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.3e-37 160.6 142 59.2
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.2e-36 154.8 142 56.3
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.3e-32 144.1 231 42.4
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 3.5e-30 136.0 190 41.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 4.0e-26 122.5 160 46.2
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 1.7e-24 117.1 215 37.2
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.6e-22 110.5 165 47.9
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.0e-21 107.8 197 40.6
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.7e-21 107.1 74 67.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 4.2e-20 102.4 77 64.9
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 6.8e-18 95.1 94 58.5
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 4.4e-17 92.4 56 75.0
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.4e-17 92.4 55 78.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 2.2e-16 90.1 58 70.7
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 6.6e-13 78.6 110 41.8
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 2.3e-10 70.1 50 64.0
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 8.9e-10 68.2 108 45.4
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 2.0e-09 67.0 73 43.8
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.7e-09 65.5 53 54.7
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.5e-09 65.1 36 77.8
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 9.8e-09 64.7 60 53.3


User provided reference genes

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