Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014764 Lotus japonicus HOM05D003397 ORTHO05D046763 1.1e-37 159.5 80 100.0
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 9.7e-18 93.2 93 57.0
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 1.3e-17 92.8 96 56.2
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 1.7e-17 92.4 93 57.0
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 2.8e-17 91.7 93 55.9
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 2.8e-17 91.7 93 55.9
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 3.7e-17 91.3 93 57.0
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 3.7e-17 91.3 93 55.9
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 4.8e-17 90.9 96 55.2
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 4.8e-17 90.9 96 54.2
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 4.8e-17 90.9 96 54.2
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 6.3e-17 90.5 93 54.8
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 6.3e-17 90.5 96 54.2
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 6.3e-17 90.5 93 55.9
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 6.3e-17 90.5 96 54.2
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 8.2e-17 90.1 93 53.8
Carub.0001s3360 Capsella rubella HOM05D003397 ORTHO05D004390 8.2e-17 90.1 93 53.8
Thhalv10003506m.g Eutrema salsugineum HOM05D003397 ORTHO05D004390 8.2e-17 90.1 96 53.1
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 8.2e-17 90.1 93 55.9
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 8.2e-17 90.1 96 54.2
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 1.1e-16 89.7 93 52.7
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 1.1e-16 89.7 93 52.7
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 1.1e-16 89.7 93 52.7
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 1.1e-16 89.7 93 54.8
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 1.1e-16 89.7 93 52.7
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 53.8
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 51.6
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 51.6
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 54.8
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 53.8
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 53.8
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 1.4e-16 89.4 96 55.2
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 1.4e-16 89.4 93 54.8
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 54.8
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 54.8
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 54.8
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 54.8
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 55.9
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 54.8
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 1.8e-16 89.0 93 55.9
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 2.4e-16 88.6 96 53.1
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 51.6
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 2.4e-16 88.6 96 55.2
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 54.8
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 2.4e-16 88.6 96 53.1
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 2.4e-16 88.6 96 53.1
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 53.8
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 53.8
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 53.8
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 55.9
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 53.8
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 2.4e-16 88.6 93 53.8
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 3.1e-16 88.2 96 53.1
CARHR034860 Cardamine hirsuta HOM05D003397 ORTHO05D004390 3.1e-16 88.2 93 52.7
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 3.1e-16 88.2 93 52.7
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 3.1e-16 88.2 96 52.1
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 4.1e-16 87.8 93 52.7
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 4.1e-16 87.8 96 53.1
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 4.1e-16 87.8 93 52.7
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 4.1e-16 87.8 93 53.8
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 4.1e-16 87.8 96 52.1
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 5.3e-16 87.4 96 54.2
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 5.3e-16 87.4 96 53.1
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 5.3e-16 87.4 93 52.7
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 7.0e-16 87.0 93 51.6
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 7.0e-16 87.0 87 57.5
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 7.0e-16 87.0 87 57.5
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 9.1e-16 86.7 93 52.7
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 9.1e-16 86.7 93 52.7
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 9.1e-16 86.7 96 51.0
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 9.1e-16 86.7 93 52.7
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.2e-15 86.3 96 52.1
Gohir.A05G268100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.2e-15 86.3 93 53.8
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.2e-15 86.3 93 53.8
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 1.2e-15 86.3 93 52.7
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 1.6e-15 85.9 96 51.0
TAR625G0333 Trochodendron aralioides HOM05D003397 ORTHO05D004390 1.6e-15 85.9 93 51.6
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 1.6e-15 85.9 96 53.1
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 2.0e-15 85.5 93 51.6
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 2.0e-15 85.5 96 52.1
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 2.0e-15 85.5 93 52.7
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 2.0e-15 85.5 93 51.6
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 2.6e-15 85.1 93 51.6
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 2.6e-15 85.1 96 52.1
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 3.5e-15 84.7 96 52.1
CARHR034880 Cardamine hirsuta HOM05D003397 ORTHO05D004390 4.5e-15 84.3 93 51.6
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 4.5e-15 84.3 96 52.1
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 4.5e-15 84.3 98 51.0
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 4.5e-15 84.3 96 51.0
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 4.5e-15 84.3 93 50.5
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 5.9e-15 84.0 93 49.5
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 5.9e-15 84.0 93 49.5
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 5.9e-15 84.0 93 52.7
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 5.9e-15 84.0 96 51.0
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 5.9e-15 84.0 96 51.0
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 5.9e-15 84.0 93 51.6
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 7.7e-15 83.6 93 50.5
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 7.7e-15 83.6 96 50.0
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 1.0e-14 83.2 96 50.0
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 1.0e-14 83.2 93 49.5
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 1.0e-14 83.2 93 50.5
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 1.0e-14 83.2 93 50.5
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 1.0e-14 83.2 96 50.0
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 1.3e-14 82.8 93 51.6
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 1.7e-14 82.4 93 49.5
Glyma.07G137400 Glycine max HOM05D003397 ORTHO05D046763 1.7e-14 82.4 103 49.5
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 1.7e-14 82.4 96 50.0
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 2.9e-14 81.6 96 51.0
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 2.9e-14 81.6 96 50.0
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 2.9e-14 81.6 93 52.7
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.9e-14 81.6 96 49.0
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.9e-14 81.6 96 49.0
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 2.9e-14 81.6 87 54.0
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 3.8e-14 81.3 93 51.6
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 3.8e-14 81.3 93 51.6
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 5.0e-14 80.9 96 51.0
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 6.5e-14 80.5 93 49.5
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 1.9e-13 79.0 96 47.9
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 1.9e-13 79.0 96 47.9
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 1.9e-13 79.0 96 47.9
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 4.2e-13 77.8 113 42.5
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 4.2e-13 77.8 113 42.5
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 1.2e-12 76.3 104 45.2
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 1.2e-12 76.3 93 47.3
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 1.2e-12 76.3 96 47.9
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 2.7e-12 75.1 104 44.2
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 2.7e-12 75.1 93 46.2
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 6.1e-12 73.9 93 46.2
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 6.1e-12 73.9 88 51.1
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 8.0e-12 73.6 93 46.2
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 1.0e-11 73.2 96 44.8
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 1.0e-11 73.2 96 44.8
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 1.0e-11 73.2 104 44.2
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.4e-11 72.8 93 45.2
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 5.2e-11 70.9 71 60.6
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 5.2e-11 70.9 104 44.2
SMO347G0105 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 5.2e-11 70.9 104 44.2
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 7.5e-10 67.0 104 39.4
ClCG03G009000 Citrullus lanatus HOM05D003397 ORTHO05D004390 4.8e-09 64.3 39 79.5
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 4.8e-09 64.3 103 39.8
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 8.2e-09 63.5 39 79.5
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 4.5e-07 57.8 98 35.7


User provided reference genes

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