Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 3.0e-102 375.2 187 100.0
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 4.2e-64 248.4 187 70.1
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 7.2e-64 247.7 186 71.5
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.7e-63 245.0 191 71.7
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.7e-63 245.0 191 71.7
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 6.1e-63 244.6 199 67.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.1e-63 244.6 199 67.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.4e-62 243.4 184 71.7
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.8e-62 240.7 199 66.3
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.6e-61 239.2 203 65.5
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.3e-61 238.8 188 70.2
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.7e-60 236.5 199 65.8
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 8.2e-60 234.2 180 72.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 8.2e-60 234.2 194 67.5
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.1e-59 233.8 194 67.5
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.4e-59 232.6 194 67.5
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.1e-59 231.9 192 66.7
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 5.3e-59 231.5 199 66.8
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 5.3e-59 231.5 196 64.3
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.2e-58 230.3 196 64.8
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.6e-58 229.9 198 65.7
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.6e-58 229.9 193 64.8
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.6e-58 229.2 197 63.5
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 4.5e-58 228.4 200 61.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 7.7e-58 227.6 202 64.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 7.7e-58 227.6 213 61.5
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 7.7e-58 227.6 198 65.2
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.3e-57 226.9 200 61.5
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.2e-57 226.1 208 61.5
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 5.0e-57 224.9 201 61.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.0e-57 224.9 149 76.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.5e-57 224.6 189 63.5
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.5e-57 224.6 189 64.0
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 8.5e-57 224.2 208 61.5
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 8.5e-57 224.2 200 62.0
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.1e-56 223.8 208 61.5
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.5e-56 223.4 201 60.7
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.5e-56 223.4 192 62.5
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.5e-56 222.6 210 59.0
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 7.2e-56 221.1 202 60.9
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.6e-55 219.9 141 73.0
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 2.1e-55 219.5 116 87.9
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 2.1e-55 219.5 221 55.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 3.6e-55 218.8 205 61.0
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.7e-55 218.4 200 59.5
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 8.0e-55 217.6 186 64.5
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 8.0e-55 217.6 203 60.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.0e-54 217.2 141 71.6
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.4e-54 216.9 194 59.8
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.4e-54 216.9 120 84.2
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.8e-54 216.5 125 81.6
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.0e-54 215.7 197 59.4
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 8.8e-54 214.2 204 60.3
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.2e-53 213.8 174 64.4
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 1.2e-53 213.8 210 56.7
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 2.0e-53 213.0 219 56.2
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 2.0e-53 213.0 200 60.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 2.6e-53 212.6 197 60.4
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 4.4e-53 211.8 216 56.9
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 7.5e-53 211.1 197 59.9
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 9.8e-53 210.7 187 61.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.3e-52 210.3 203 56.7
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.7e-52 209.9 182 63.2
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.7e-52 209.9 147 70.1
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 1.7e-52 209.9 194 61.9
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 2.2e-52 209.5 193 59.1
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.7e-52 208.8 197 57.9
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 4.8e-52 208.4 202 55.9
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 6.3e-52 208.0 182 61.5
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 6.3e-52 208.0 194 61.9
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.3e-52 207.6 170 61.8
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 8.3e-52 207.6 138 71.7
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.4e-51 206.8 193 60.1
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.4e-51 206.8 168 67.9
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.8e-51 206.5 165 61.8
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 2.4e-51 206.1 185 63.2
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 4.1e-51 205.3 140 71.4
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 4.1e-51 205.3 140 71.4
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 4.1e-51 205.3 140 71.4
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 4.1e-51 205.3 140 71.4
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 5.4e-51 204.9 147 70.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 7.0e-51 204.5 150 70.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 7.0e-51 204.5 180 57.2
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 7.0e-51 204.5 114 81.6
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 7.0e-51 204.5 188 59.6
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 9.1e-51 204.1 198 56.6
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.1e-51 204.1 202 58.9
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.6e-50 203.4 176 60.2
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.6e-50 203.4 190 60.5
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 2.0e-50 203.0 188 60.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 2.7e-50 202.6 191 59.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.7e-50 202.6 186 57.5
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.5e-50 202.2 195 56.9
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 3.5e-50 202.2 208 56.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.0e-49 200.7 178 59.0
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.3e-49 200.3 169 65.1
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.2e-49 199.5 192 58.3
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 2.5e-48 196.1 114 77.2
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 3.2e-48 195.7 114 77.2
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 2.1e-47 193.0 131 71.0
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.7e-47 192.6 179 57.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 6.1e-47 191.4 170 56.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 6.1e-47 191.4 165 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.0e-47 191.0 139 64.7
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.0e-47 191.0 139 65.5
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 6.8e-46 188.0 186 54.3
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 4.4e-45 185.3 184 55.4
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 3.1e-43 179.1 168 60.1
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 4.1e-43 178.7 154 58.4
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 5.4e-43 178.3 192 54.7
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 9.1e-43 177.6 109 75.2
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 9.1e-43 177.6 183 52.5
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 3.5e-42 175.6 142 62.0
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.3e-41 172.9 171 57.3
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 6.6e-41 171.4 113 69.9
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.9e-40 169.9 134 61.2
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 7.2e-40 167.9 108 72.2
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.2e-39 167.2 181 49.7
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 2.1e-39 166.4 120 61.7
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 3.4e-37 159.1 175 53.1
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 3.4e-37 159.1 118 67.8
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 4.0e-30 135.6 122 51.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 5.2e-30 135.2 117 53.8
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.2e-28 129.8 156 51.9
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 4.3e-24 115.5 117 48.7
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 4.3e-24 115.5 149 41.6
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 4.7e-15 85.5 86 52.3
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 6.8e-06 55.1 135 33.3


User provided reference genes

Program Settings