Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 8.6e-214 746.9 424 100.0
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 5.1e-150 535.0 425 73.4
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 5.7e-149 531.6 300 94.3
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 5.9e-146 521.5 432 70.8
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 2.5e-141 506.1 428 69.2
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 7.4e-141 504.6 426 68.5
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 6.3e-140 501.5 436 68.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 3.1e-139 499.2 430 69.8
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 3.6e-135 485.7 433 67.2
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.2e-132 476.5 430 68.6
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-131 474.2 429 68.8
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.8e-131 473.4 428 68.0
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 3.8e-129 465.7 426 65.3
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 2.7e-119 433.0 427 63.2
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 7.0e-99 365.2 426 53.8
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 3.5e-98 362.8 426 53.3
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 1.4e-94 350.9 428 51.9
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.1e-94 349.7 393 59.3
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 4.0e-94 349.4 444 50.5
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 2.4e-91 340.1 425 52.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.7e-90 336.7 349 58.5
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 7.8e-90 335.1 431 51.7
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.3e-89 334.3 427 52.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 8.0e-87 325.1 500 45.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 4.4e-85 319.3 440 51.6
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 4.1e-83 312.8 428 51.4
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 3.5e-82 309.7 424 51.2
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 3.3e-80 303.1 427 49.2
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 4.3e-80 302.8 431 48.5
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.2e-79 298.9 286 65.4
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 6.8e-78 295.4 437 48.5
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 3.4e-77 293.1 430 47.7
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 7.5e-77 292.0 429 47.8
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.1e-75 288.1 440 46.8
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 3.2e-75 286.6 448 45.8
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 7.1e-75 285.4 431 47.3
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 9.2e-75 285.0 434 44.7
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 9.2e-75 285.0 431 46.9
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 3.0e-73 280.0 447 45.6
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-72 278.1 428 47.0
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 1.9e-72 277.3 423 45.4
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 1.9e-72 277.3 328 52.7
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.5e-72 276.9 429 46.2
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 2.5e-72 276.9 427 45.9
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.6e-72 275.8 438 45.0
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 5.6e-72 275.8 471 43.1
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 2.8e-71 273.5 436 46.8
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.1e-70 271.6 428 45.6
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.2e-69 268.1 302 52.6
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 2.6e-69 266.9 302 52.3
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 4.9e-68 262.7 340 50.6
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.1e-67 261.5 444 44.1
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 1.1e-67 261.5 432 44.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.4e-67 261.2 318 51.6
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 2.4e-67 260.4 436 43.6
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 3.2e-67 260.0 433 44.8
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 5.4e-67 259.2 430 45.1
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 9.2e-67 258.5 335 49.9
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.2e-66 258.1 398 44.5
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 2.7e-66 256.9 427 44.7
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 8.7e-65 251.9 439 44.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 8.7e-65 251.9 430 47.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 1.1e-64 251.5 435 44.6
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 7.3e-64 248.8 300 54.0
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 1.2e-63 248.1 428 42.8
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.1e-63 247.3 321 48.9
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 2.1e-63 247.3 427 43.3
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 4.7e-63 246.1 428 44.6
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.1e-62 245.0 343 48.1
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.8e-62 244.2 428 45.6
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.3e-62 242.7 352 47.2
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 9.0e-62 241.9 301 53.8
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 7.6e-61 238.8 423 41.8
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.7e-60 237.7 430 43.5
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.9e-60 236.9 424 42.2
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.2e-58 231.5 211 64.0
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.6e-58 231.1 429 42.9
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.0e-57 228.4 426 41.8
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 8.7e-57 225.3 238 57.6
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-56 224.6 263 53.2
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 5.6e-56 222.6 438 41.6
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 9.6e-56 221.9 196 64.8
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 9.6e-56 221.9 264 53.8
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.3e-55 221.5 441 41.7
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 1.6e-55 221.1 432 41.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 8.1e-55 218.8 249 56.2
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.1e-54 218.4 433 41.8
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.1e-54 218.4 376 41.2
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 5.3e-54 216.1 305 47.5
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 8.4e-52 208.8 276 51.8
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.9e-51 207.6 422 41.7
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.4e-51 207.2 308 45.1
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.6e-50 204.5 357 41.5
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 2.1e-50 204.1 511 36.2
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 8.7e-49 198.7 442 39.8
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 5.6e-48 196.1 432 40.7
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 9.6e-48 195.3 472 37.9
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 9.6e-48 195.3 455 38.9
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 9.6e-48 195.3 267 46.1
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 8.1e-47 192.2 476 37.0
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.1e-46 191.8 394 38.6
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 2.6e-45 187.2 268 47.4
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 3.4e-45 186.8 426 39.2
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 7.6e-45 185.7 424 36.6
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.3e-44 184.9 293 47.1
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 2.9e-44 183.7 324 42.6
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 3.8e-44 183.3 298 43.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 6.4e-44 182.6 380 38.2
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-40 171.4 156 61.5
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.5e-40 170.6 441 38.8
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.5e-37 159.8 219 47.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 8.4e-36 155.6 167 55.1
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.4e-35 154.8 135 57.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 1.9e-32 144.4 200 48.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 4.3e-32 143.3 224 45.5
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.5e-29 134.8 210 42.9
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.9e-28 130.6 107 63.6
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.1e-27 128.6 398 33.7
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.4e-27 128.3 288 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 3.2e-27 127.1 199 41.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 2.2e-23 114.4 263 36.1
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.0e-20 105.5 110 46.4
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.3e-20 105.1 145 42.8
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.7e-18 96.7 330 30.9
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.5e-16 91.7 66 72.7
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 9.4e-11 72.4 50 66.0
Glyma.03G049200 Glycine max HOM05D006277 ORTHO05D007673 1.5e-08 65.1 54 66.7
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 4.4e-08 63.5 204 33.3
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 5.7e-08 63.2 201 29.4
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 5.3e-06 56.6 214 29.4


User provided reference genes

Program Settings