Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1920.6 986 100.0
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1661.0 986 85.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1657.5 987 84.8
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1648.6 986 84.8
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1631.7 986 83.6
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1628.2 986 83.9
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1611.3 990 82.9
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1601.3 990 82.3
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1599.3 987 83.0
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1586.2 994 81.7
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1515.4 990 77.3
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1490.7 990 76.0
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 990 75.3
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 990 74.8
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1457.6 984 74.5
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 989 73.6
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 993 73.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1443.7 992 74.0
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1442.9 990 73.4
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1441.8 969 75.2
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 984 73.2
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1440.6 990 73.6
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 984 73.4
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 991 73.3
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 991 73.0
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 991 72.8
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 990 73.3
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1429.8 979 73.2
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 991 73.1
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 990 73.8
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1427.2 990 72.2
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1427.2 990 72.5
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 989 73.5
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 979 72.5
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1425.2 987 72.3
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1424.5 992 72.8
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 1004 72.0
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 994 73.0
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 989 73.5
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 995 71.2
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 993 72.0
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 1024 71.0
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 989 72.0
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1401.7 993 71.2
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 991 71.0
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 1014 70.9
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 992 70.2
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1390.2 989 72.1
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 991 71.2
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 990 71.1
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1385.2 984 70.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1384.4 990 69.6
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 994 71.0
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1382.5 992 70.9
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1380.5 989 71.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1378.2 985 70.4
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1376.3 1072 66.5
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1375.5 992 69.9
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1372.8 991 70.0
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1367.8 987 69.7
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1367.8 993 70.8
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1367.8 969 71.7
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1367.4 990 71.3
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 963 71.1
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1365.1 993 69.3
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 990 69.1
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1358.6 992 69.3
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1357.4 990 69.2
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 990 69.2
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 992 70.1
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1347.4 960 69.7
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1343.9 993 69.9
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1340.9 959 71.7
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1338.9 993 68.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1329.7 990 68.6
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1323.5 987 67.0
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 990 67.6
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1319.3 918 72.3
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1315.8 992 68.2
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1314.7 990 67.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1314.7 984 68.4
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 987 67.7
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 992 68.5
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1304.3 962 69.3
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1301.6 993 66.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1300.0 1004 67.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1293.9 895 72.8
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1292.3 980 66.3
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1292.3 980 66.3
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1280.8 992 66.1
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1279.6 993 66.1
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1277.7 993 65.8
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1274.6 993 66.2
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1269.6 997 66.2
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1262.7 991 64.7
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1254.2 987 66.3
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1236.1 939 68.2
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1209.9 971 63.3
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1204.1 963 64.7
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1199.5 723 84.8
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1155.2 991 59.1
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1140.9 862 68.3
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1137.1 911 66.4
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1084.3 995 58.6
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.2e-292 1009.2 907 60.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 4.5e-290 1001.5 992 53.1
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 9.1e-275 950.7 995 49.4
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 5.0e-273 944.9 992 49.4
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 3.2e-272 942.2 996 50.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 2.7e-271 939.1 996 50.5
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.9e-265 919.1 997 49.7
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.4e-261 905.6 611 74.3
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-256 890.6 597 74.7
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 4.7e-255 885.2 842 55.9
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.1e-248 864.0 607 71.3
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 8.3e-244 847.8 982 45.1
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.4e-243 845.1 743 59.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.5e-237 827.0 804 53.6
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.2e-204 716.8 1081 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 5.3e-198 695.7 911 41.3
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.7e-167 594.3 427 71.2
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.2e-138 498.4 356 70.8
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 4.9e-135 486.5 304 77.3
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 4.1e-134 483.4 312 77.2
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.1e-121 442.2 1194 28.8
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.7e-82 310.8 264 60.2
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.7e-82 310.8 264 60.2
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.5e-67 261.5 1071 25.0
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.5e-51 209.1 239 47.3
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 3.1e-33 148.3 937 21.1
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 3.0e-28 131.7 122 61.5
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.5e-27 129.4 142 47.9
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 5.0e-23 114.4 141 45.4
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.5e-22 112.1 109 48.6
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.2e-19 103.2 81 63.0
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.3e-15 89.7 53 81.1
AT5G17020 Arabidopsis thaliana HOM05D002636 ORTHO05D003490 6.6e-07 60.8 242 20.2
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 1.9e-06 59.3 49 53.1
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 2.5e-06 58.9 45 66.7
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 2.5e-06 58.9 45 66.7
BraA01t04592Z Brassica rapa HOM05D002636 ORTHO05D003490 3.3e-06 58.5 253 20.6
RcHm_v2.0_Chr1g0383961 Rosa chinensis HOM05D002636 ORTHO05D003490 3.3e-06 58.5 247 20.2
Glyma.11G011700 Glycine max HOM05D002636 ORTHO05D003490 4.3e-06 58.2 247 20.6


User provided reference genes

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