Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 7.9e-214 746.9 393 100.0
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.4e-186 655.6 377 92.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.9e-139 499.2 378 74.3
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.9e-138 496.5 375 72.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 4.3e-135 485.3 382 72.5
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.6e-132 476.1 381 68.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.6e-132 476.1 383 70.5
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.4e-130 470.3 383 69.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.3e-127 459.1 379 69.4
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 3.2e-122 442.6 388 63.9
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 9.3e-122 441.0 380 64.2
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.8e-120 436.8 378 64.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 7.4e-119 431.4 382 64.7
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.3e-118 430.6 381 63.0
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-118 430.6 380 64.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.6e-118 430.3 382 64.9
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.6e-118 430.3 380 63.7
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.8e-117 426.8 380 64.2
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.1e-117 426.0 401 62.8
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 5.3e-117 425.2 382 64.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.6e-116 422.9 379 64.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.5e-116 422.2 379 64.4
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 5.9e-116 421.8 385 65.5
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.0e-115 421.0 381 64.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.0e-115 421.0 375 64.8
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.3e-115 420.6 380 62.9
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.2e-115 419.9 376 63.3
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.2e-115 419.9 379 63.1
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.9e-115 419.5 380 63.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.9e-115 419.5 380 63.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.9e-115 419.5 378 61.4
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.8e-115 419.1 382 63.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.4e-114 417.2 380 63.4
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.5e-114 416.4 380 62.1
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.2e-114 415.6 380 62.1
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 7.2e-114 414.8 374 63.4
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 7.2e-114 414.8 380 62.1
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.7e-113 412.9 376 62.5
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.3e-112 410.6 381 61.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.3e-112 410.6 376 63.6
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.8e-112 410.2 385 61.6
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.8e-112 410.2 374 61.8
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.3e-112 409.8 382 62.3
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.0e-112 409.5 394 60.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 3.0e-112 409.5 388 61.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 3.9e-112 409.1 384 62.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 3.9e-112 409.1 374 62.0
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 6.7e-112 408.3 374 62.0
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 8.7e-112 407.9 383 62.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 8.7e-112 407.9 373 61.9
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.1e-111 407.5 376 61.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.5e-111 407.1 394 60.9
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 7.4e-111 404.8 376 60.9
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.2e-110 403.3 382 60.5
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.8e-110 402.9 375 62.1
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.7e-110 402.5 380 60.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 3.7e-110 402.5 369 62.1
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 6.3e-110 401.7 382 60.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.2e-110 401.4 382 61.0
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.1e-109 401.0 374 59.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.4e-109 400.6 374 60.4
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.4e-109 400.6 374 61.5
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.5e-108 397.1 372 61.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.6e-108 396.4 380 60.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.6e-108 396.4 379 61.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 7.7e-108 394.8 378 60.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-106 391.0 383 60.8
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.5e-106 388.7 374 58.6
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.6e-105 385.6 378 58.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.9e-105 384.8 371 59.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.1e-103 380.9 380 58.9
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.3e-103 379.4 410 55.4
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.7e-102 377.1 372 58.1
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.7e-102 377.1 397 55.9
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.8e-102 376.3 395 56.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.8e-101 373.6 357 62.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.2e-100 370.9 446 51.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 5.9e-100 368.6 393 57.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.7e-99 367.1 376 57.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.2e-98 362.5 380 55.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.4e-98 361.3 383 56.1
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.6e-97 360.5 383 55.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.7e-97 359.8 374 55.6
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 3.6e-97 359.4 378 56.3
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 4.7e-97 359.0 387 55.3
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.7e-97 359.0 388 54.4
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.8e-96 357.1 383 56.1
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 4.4e-95 352.4 451 49.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.4e-95 351.7 368 57.1
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.7e-95 351.3 397 54.2
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 9.1e-93 344.7 381 53.5
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 9.1e-93 344.7 376 57.2
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.1e-90 337.8 401 52.4
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.2e-90 336.3 373 54.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.2e-90 335.9 373 54.7
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 9.4e-90 334.7 394 52.0
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.6e-89 332.8 377 53.6
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.6e-89 332.8 382 50.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 4.7e-89 332.4 397 52.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.4e-88 330.9 401 51.4
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.4e-88 330.9 401 51.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.2e-87 327.8 301 64.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.3e-86 324.3 371 51.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.7e-86 323.9 402 51.7
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.3e-85 318.9 384 51.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.0e-80 303.1 401 48.6
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-79 301.2 400 48.2
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 3.7e-78 296.2 399 47.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 3.7e-78 296.2 399 47.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.7e-78 296.2 399 48.1
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.8e-77 293.9 396 47.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-76 290.8 399 47.6
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.3e-75 287.7 370 50.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.5e-74 284.3 376 48.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.5e-71 271.9 347 50.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.3e-67 261.2 423 40.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.4e-64 251.1 250 59.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 8.9e-64 248.4 236 60.2
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.9e-62 242.7 189 68.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.4e-61 240.4 379 44.3
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.0e-60 237.3 459 36.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.0e-59 233.4 363 41.0
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 7.3e-50 202.2 260 49.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.1e-45 186.4 209 55.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 2.8e-41 173.7 396 34.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 7.8e-36 155.6 115 68.7
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.4e-32 144.8 120 64.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.8e-31 139.4 176 51.1
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.6e-17 94.7 470 24.3
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 6.2e-17 92.8 430 27.0
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 8.1e-17 92.4 121 47.1
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.4e-16 91.7 56 82.1
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 7.6e-15 85.9 63 66.7
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.9e-14 84.0 62 67.7
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.5e-12 77.0 117 43.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.3e-11 74.3 264 29.5
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.5e-10 70.9 61 67.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 5.6e-10 69.7 58 67.2
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 5.6e-10 69.7 61 67.2
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 3.7e-09 67.0 60 65.0
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.5e-07 61.6 50 64.0


User provided reference genes

Program Settings