Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 0.0e+00 1417.9 743 100.0
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 0.0e+00 1325.8 787 90.7
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 3.3e-309 1064.7 790 74.2
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 6.1e-308 1060.4 795 73.6
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 4.6e-303 1044.3 792 72.6
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 2.3e-302 1042.0 796 73.2
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 4.3e-293 1011.1 795 71.2
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 4.0e-291 1004.6 795 70.9
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 7.1e-288 993.8 788 69.4
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 2.0e-282 975.7 794 68.4
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 4.4e-282 974.5 799 69.1
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 6.4e-281 970.7 788 70.4
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 1.5e-277 959.5 787 69.3
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 1.1e-275 953.4 792 68.9
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 1.8e-275 952.6 788 69.3
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 1.1e-264 916.8 676 72.6
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 7.6e-242 840.9 797 61.1
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 1.7e-241 839.7 786 62.2
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 6.1e-239 831.2 797 60.1
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 7.4e-237 824.3 812 58.5
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 3.7e-236 822.0 663 67.1
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 1.4e-235 820.1 787 60.5
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 3.1e-235 818.9 759 62.3
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 1.5e-234 816.6 758 62.0
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 1.5e-234 816.6 796 59.9
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 5.9e-234 814.7 759 61.9
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.3e-233 813.5 760 61.6
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 2.9e-233 812.4 779 59.6
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 2.3e-230 802.7 788 58.9
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 1.3e-228 797.0 798 57.3
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 2.8e-228 795.8 723 62.2
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 2.4e-227 792.7 723 62.1
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 1.5e-226 790.0 809 56.4
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 1.5e-226 790.0 678 63.9
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 7.7e-226 787.7 661 64.3
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 2.9e-225 785.8 669 62.6
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 6.5e-225 784.6 576 72.7
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 3.2e-224 782.3 668 63.5
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 7.9e-223 777.7 723 60.6
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 2.3e-222 776.2 673 62.6
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 8.8e-222 774.2 862 52.4
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 7.4e-221 771.2 687 61.7
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 1.0e-217 760.8 800 55.6
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 1.0e-217 760.8 664 62.2
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 2.1e-215 753.1 795 55.3
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 1.4e-214 750.4 782 56.3
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 1.5e-213 746.9 669 61.1
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 2.0e-213 746.5 776 56.1
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 8.2e-212 741.1 795 55.2
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 2.9e-209 732.6 805 52.9
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 3.0e-206 722.6 656 59.9
QL07p027173 Quercus lobata HOM05D005257 ORTHO05D006425 7.5e-205 718.0 984 47.8
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 2.2e-204 716.5 775 53.7
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 6.3e-204 714.9 752 55.2
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 6.3e-204 714.9 665 58.5
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 1.1e-203 714.1 776 53.1
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 2.4e-203 713.0 641 61.0
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 4.5e-202 708.8 846 51.5
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 5.9e-202 708.4 528 69.7
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 7.7e-202 708.0 792 53.2
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 1.7e-201 706.8 851 48.9
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 2.2e-201 706.4 668 58.7
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 6.5e-201 704.9 670 59.1
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 1.9e-200 703.4 661 58.4
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 3.2e-200 702.6 757 52.2
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 2.8e-199 699.5 833 50.7
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 2.3e-198 696.4 795 51.7
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 2.3e-198 696.4 665 59.7
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 8.8e-198 694.5 650 58.6
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 7.5e-197 691.4 892 47.6
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 6.3e-196 688.3 776 52.6
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 1.8e-195 686.8 704 56.1
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 7.7e-194 681.4 821 49.7
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 1.0e-193 681.0 764 51.4
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 1.3e-193 680.6 890 48.5
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 2.8e-191 672.9 799 50.7
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 3.6e-191 672.5 799 50.6
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 4.7e-191 672.2 668 58.2
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 8.0e-191 671.4 668 56.7
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 2.6e-189 666.4 784 51.0
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 4.4e-189 665.6 796 50.0
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 1.4e-187 660.6 984 43.6
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 3.2e-187 659.4 797 49.3
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 4.1e-187 659.1 784 50.1
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 2.7e-186 656.4 662 56.2
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 5.9e-186 655.2 714 53.2
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 7.8e-186 654.8 791 50.1
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 1.7e-185 653.7 840 49.4
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 1.7e-185 653.7 790 50.1
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 4.3e-184 649.0 726 51.7
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 4.3e-184 649.0 804 48.3
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 9.5e-184 647.9 789 48.9
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 3.6e-183 646.0 591 62.8
Cpa.g.sc56.49 Carica papaya HOM05D005257 ORTHO05D006425 2.2e-180 636.7 796 49.5
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 2.4e-179 633.3 670 54.9
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 3.2e-179 632.9 637 56.5
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 4.6e-178 629.0 682 54.5
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 6.0e-170 602.1 794 47.1
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 2.1e-167 593.6 555 60.2
Hund03701 Selenicereus undatus HOM05D005257 ORTHO05D006425 3.8e-164 582.8 422 70.4
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 5.4e-163 578.9 543 59.3
Hund15057 Selenicereus undatus HOM05D005257 ORTHO05D006425 5.2e-158 562.4 444 66.7
Zm00001eb417990 Zea mays HOM05D005257 ORTHO05D006425 4.8e-151 539.3 438 63.9
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 4.5e-149 532.7 572 51.6
Os05g0147200 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 2.9e-148 530.0 433 63.5
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 1.4e-147 527.7 527 57.7
Sopen03g028050 Solanum pennellii HOM05D005257 ORTHO05D006425 7.4e-144 515.4 868 41.7
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 9.3e-139 498.4 526 50.2
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 2.7e-138 496.9 863 38.5
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 2.2e-119 434.1 551 44.5
Nitab4.5_0001606g0020 Nicotiana tabacum HOM05D005257 ORTHO05D006425 2.1e-98 364.4 393 56.0
Nitab4.5_0000098g0080 Nicotiana tabacum HOM05D005257 ORTHO05D006425 5.7e-96 356.3 393 53.2
COL.COLO4_28605 Corchorus olitorius HOM05D005257 ORTHO05D006425 2.3e-84 317.8 282 60.6
Psat5g302960 Pisum sativum HOM05D005257 ORTHO05D006425 1.0e-76 292.4 232 69.0
SEGI_02385 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.5e-75 288.5 281 53.4
Hma1.2p1_0768F.1_g215610 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 3.3e-75 287.3 213 67.1
Nitab4.5_0000098g0070 Nicotiana tabacum HOM05D005257 ORTHO05D006425 2.1e-74 284.6 249 58.6
Pp3c3_21687 Physcomitrium patens HOM05D005257 ORTHO05D006425 1.6e-69 268.5 590 35.4
Nitab4.5_0010527g0010 Nicotiana tabacum HOM05D005257 ORTHO05D006425 1.9e-67 261.5 239 57.7
SMO172G0149 Selaginella moellendorffii HOM05D005257 ORTHO05D006425 8.6e-60 236.1 260 51.2
arahy.Tifrunner.gnm1.ann1.N37HG5 Arachis hypogaea HOM05D006740 ORTHO05D008571 4.1e-54 217.2 305 49.5
SEGI_16290 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.9e-51 208.4 381 39.1
MCO03G302 Micromonas commoda HOM05D005257 ORTHO05D006425 3.6e-50 204.1 514 30.7
Cre09.g415200 Chlamydomonas reinhardtii HOM05D005257 ORTHO05D006425 7.6e-48 196.4 412 34.2
Cfa005497 Carpinus fangiana HOM05D005257 ORTHO05D006425 2.8e-42 177.9 116 74.1
TPR.G36393 Trifolium pratense HOM05D005257 ORTHO05D006425 2.9e-39 167.9 101 82.2
Atru.ctg1436.26 Acer truncatum HOM05D005257 ORTHO05D006425 5.6e-35 153.7 456 25.9
COL.COLO4_28604 Corchorus olitorius HOM05D005257 ORTHO05D006425 1.8e-28 132.1 328 35.1
SEGI_31243 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 7.4e-27 126.7 118 56.8
Ah.12g060700 Amaranthus hybridus HOM05D005257 ORTHO05D006425 4.6e-21 107.5 337 32.0
PRCOL_00000790 Prasinoderma coloniale HOM05D005257 ORTHO05D006425 1.0e-20 106.3 371 27.5
AagrBONN_evm.TU.Sc2ySwM_344.314 Anthoceros agrestis HOM05D005257 ORTHO05D006425 3.3e-19 101.3 106 50.9
Ah.15g100130 Amaranthus hybridus HOM05D005257 ORTHO05D006425 5.8e-16 90.5 69 59.4
RcHm_v2.0_Chr5g0003011 Rosa chinensis HOM05D005257 ORTHO05D006425 2.9e-15 88.2 63 68.3
RcHm_v2.0_Chr5g0003131 Rosa chinensis HOM05D005257 ORTHO05D006425 2.9e-15 88.2 63 68.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.3e-14 83.2 311 26.0
Ah.12g064660 Amaranthus hybridus HOM05D005257 ORTHO05D006425 5.7e-11 73.9 62 62.9
Hma1.2p1_0768F.1_g215590 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 1.4e-09 69.3 227 33.9
SEGI_10502 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 2.4e-09 68.6 153 35.3
PGSC0003DMG400038555 Solanum tuberosum HOM05D005257 ORTHO05D006425 5.3e-09 67.4 102 40.2
FAN27G2161 Fragaria x ananassa HOM05D005257 ORTHO05D006425 2.0e-08 65.5 87 49.4
SMO118G0258 Selaginella moellendorffii HOM05D002396 ORTHO05D002779 5.0e-07 60.8 475 23.4
PRCOL_00000882 Prasinoderma coloniale HOM05D002396 ORTHO05D002779 2.5e-06 58.5 551 21.4
Os05g0147150 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 4.2e-06 57.8 151 33.1
ECA248G3826 Erigeron canadensis HOM05D000006 ORTHO05D000091 7.2e-06 57.0 35 71.4
Ca_26289_v3 Cicer arietinum L. HOM05D002396 ORTHO05D002779 9.4e-06 56.6 461 20.0
SEGI_02339 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 9.4e-06 56.6 196 30.6


User provided reference genes

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