Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 0.0e+00 2362.8 1196 100.0
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 0.0e+00 1602.8 1144 72.4
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 0.0e+00 1576.6 1198 69.4
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 0.0e+00 1548.5 1200 69.8
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1479.5 1258 63.8
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 0.0e+00 1469.9 1077 70.7
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1452.6 1201 64.9
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 0.0e+00 1414.8 1109 67.6
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 0.0e+00 1382.9 1199 63.5
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1149.0 1240 53.5
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1107.4 1244 49.7
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 0.0e+00 1107.4 720 78.3
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 3.6e-310 1068.5 1244 48.6
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 1.1e-306 1057.0 1234 50.2
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 2.1e-289 999.6 1251 48.0
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 1.1e-287 993.8 1230 46.7
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 4.3e-287 991.9 1224 48.1
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 4.0e-285 985.3 1241 46.7
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 9.0e-285 984.2 1254 46.5
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 7.4e-279 964.5 1241 47.4
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 2.1e-278 963.0 1243 46.2
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 3.1e-277 959.1 1238 46.4
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.7e-275 953.4 943 53.4
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 7.9e-273 944.5 1275 45.6
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 6.1e-265 918.3 841 57.4
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 5.1e-264 915.2 1102 47.7
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 4.8e-262 908.7 1238 45.2
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 1.1e-255 887.5 1307 42.2
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 1.5e-255 887.1 929 52.4
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 3.7e-246 855.9 861 54.2
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.2e-244 850.9 1264 42.6
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.7e-243 847.0 1240 42.6
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 3.4e-239 832.8 1226 42.7
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 3.7e-238 829.3 1261 40.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 4.1e-237 825.9 1227 42.1
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.9e-236 822.0 834 53.5
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 3.2e-234 816.2 1032 47.0
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.2e-228 797.7 1291 39.0
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 4.0e-224 782.7 1263 40.9
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 5.2e-224 782.3 924 48.3
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 8.3e-222 775.0 861 49.2
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.4e-221 774.2 922 48.0
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.8e-221 773.9 1213 40.8
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 2.7e-220 770.0 837 50.2
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 6.6e-219 765.4 854 48.7
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.5e-218 764.2 921 47.2
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.8e-217 760.0 856 48.9
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 6.8e-216 755.4 976 46.3
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 9.8e-215 751.5 1010 42.7
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 2.4e-213 746.9 922 47.2
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 6.0e-212 742.3 924 46.9
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.2e-209 734.6 1027 44.2
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 6.2e-209 732.3 1189 40.1
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 1.4e-205 721.1 592 66.9
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.0e-203 714.9 1177 39.3
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.3e-203 713.8 1027 43.6
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 1.5e-202 711.1 1222 38.3
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 8.9e-200 701.8 921 45.8
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.6e-196 691.0 1217 38.0
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 2.9e-190 670.2 1212 38.0
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 5.4e-189 666.0 829 46.9
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 9.6e-186 655.2 474 73.4
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 1.4e-176 624.8 1159 36.1
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 1.9e-173 614.4 649 51.2
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 8.7e-171 605.5 844 44.7
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.0e-158 563.1 879 40.4
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 2.4e-152 544.3 930 38.5
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 4.1e-152 543.5 832 43.0
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.0e-151 541.2 841 38.6
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.6e-148 530.4 872 38.3
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 7.9e-148 529.3 918 39.3
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.7e-142 511.5 750 40.3
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 2.5e-141 507.7 638 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 2.1e-140 504.6 853 37.5
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-135 488.4 819 40.4
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 4.0e-131 473.8 520 49.6
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.6e-127 461.8 516 48.6
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.2e-100 372.5 365 60.3
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 6.9e-67 260.4 374 43.0
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 1.5e-66 259.2 852 26.8
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 4.9e-57 227.6 195 59.0
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 6.0e-55 220.7 845 24.6
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.9e-54 218.0 241 50.2
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 6.7e-54 217.2 226 52.7
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 4.3e-53 214.5 241 49.8
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 1.6e-52 212.6 590 29.2
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.5e-47 194.9 578 28.9
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 3.7e-36 158.3 579 25.7
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 7.2e-32 144.1 122 56.6
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 3.0e-30 138.7 89 76.4
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 8.2e-28 130.6 89 76.4
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 2.4e-27 129.0 101 63.4
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 7.7e-26 124.0 107 57.9
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 6.5e-25 120.9 89 66.3
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.7e-23 115.5 89 65.2
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 1.3e-20 106.7 136 44.1
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 1.8e-19 102.8 696 21.8
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 1.3e-17 96.7 353 26.3
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 1.2e-15 90.1 91 53.8
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.8e-14 86.3 586 23.4
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 3.1e-11 75.5 58 67.2
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.3e-11 74.7 248 30.2
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.9e-09 68.9 232 27.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 3.8e-09 68.6 192 33.3
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 4.2e-08 65.1 60 53.3
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 7.2e-08 64.3 162 27.8
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 3.6e-07 62.0 292 21.9
MCO09G563 Micromonas commoda HOM05D009332 ORTHO05D011893 4.7e-07 61.6 147 26.5
Medtr8g062580 Medicago truncatula HOM05D000152 ORTHO05D001356 8.0e-07 60.8 53 62.3
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 2.3e-06 59.3 237 23.6
Gohir.A10G104400 Gossypium hirsutum HOM05D002999 ORTHO05D003137 4.0e-06 58.5 291 22.0
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 5.2e-06 58.2 263 20.2
Peaxi162Scf00936g00314 Petunia axillaris HOM05D002999 ORTHO05D003137 8.8e-06 57.4 273 19.8


User provided reference genes

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