Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1571.6 811 100.0
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1369.4 757 87.2
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1367.4 753 87.4
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1353.2 753 86.3
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1349.0 750 86.5
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1347.0 757 85.6
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1347.0 750 85.9
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1345.9 745 86.7
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1344.3 749 86.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1342.0 757 85.3
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1250.3 754 78.9
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1247.6 749 78.6
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1246.5 754 78.9
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 753 79.4
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1242.6 755 78.5
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1241.9 747 79.5
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1241.1 752 78.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1234.6 738 78.9
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1232.6 756 77.4
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1231.5 756 77.4
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1230.7 755 78.5
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1228.4 756 78.6
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1228.0 753 78.8
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1226.8 707 84.3
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1225.7 742 78.4
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1224.9 753 76.5
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1224.5 756 77.0
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 755 77.9
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 753 77.2
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 753 77.4
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 747 78.2
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 764 76.7
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1206.4 753 77.3
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1205.3 749 76.6
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 742 76.8
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1203.7 746 77.7
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 767 75.7
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 758 75.5
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1201.4 748 75.9
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 752 75.1
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1200.3 765 75.6
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 741 77.1
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 752 75.3
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 746 75.6
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 743 76.3
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 743 76.2
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1186.4 751 75.4
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 749 76.9
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 741 75.4
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1185.2 740 75.8
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 752 74.1
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1183.7 748 75.1
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 746 74.7
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 745 74.4
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 749 75.2
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1174.5 771 74.1
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 761 75.8
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1170.6 747 73.4
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 749 74.1
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1167.9 742 75.1
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 762 73.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 779 72.5
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 749 73.2
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 749 73.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 749 74.1
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 750 73.5
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 749 73.3
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 750 73.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 749 73.4
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 749 73.4
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1158.3 742 74.5
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 749 72.6
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1149.8 749 73.8
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1147.1 741 73.3
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 749 72.0
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 693 79.5
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1135.2 783 71.1
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1129.8 765 73.2
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1112.8 764 70.2
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1106.3 741 70.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1098.2 733 71.8
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1095.5 688 75.7
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1094.3 802 67.5
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.7e-311 1072.4 663 78.1
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 2.2e-311 1072.0 695 73.5
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 6.7e-311 1070.5 742 71.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 2.1e-309 1065.4 790 66.2
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 2.4e-305 1052.0 754 69.0
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 5.5e-302 1040.8 685 72.3
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 4.6e-301 1037.7 615 82.9
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 8.2e-298 1026.9 738 67.6
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.2e-295 1018.8 838 62.2
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.3e-290 1003.0 625 77.4
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.2e-280 969.9 745 61.6
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 1.6e-277 959.5 741 60.1
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 5.2e-276 954.5 746 60.3
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.2e-256 890.2 642 67.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 9.5e-246 854.0 630 65.4
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.2e-240 837.0 688 61.9
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-219 764.2 677 54.8
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 3.0e-207 726.1 523 66.7
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 2.4e-164 583.6 790 41.5
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 3.4e-150 536.6 354 67.5
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 7.5e-142 508.8 606 48.5
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.9e-125 453.0 278 74.1
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 4.2e-100 370.2 289 69.9
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.4e-93 345.9 271 63.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 7.9e-91 339.3 225 76.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.3e-85 322.0 241 69.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 5.5e-60 236.9 146 75.3
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 9.1e-55 219.5 146 76.0
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.1e-47 196.1 120 75.8
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.4e-41 174.5 127 64.6
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 4.2e-36 157.5 86 76.7
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.6e-30 137.5 157 48.4
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 8.9e-26 123.2 84 65.5
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 4.6e-22 110.9 114 46.5
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 2.1e-19 102.1 105 54.3
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 5.8e-17 94.0 60 75.0
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.4e-15 89.4 56 76.8
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.1e-14 85.5 46 84.8
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.5e-12 79.3 43 81.4
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 4.9e-08 64.3 48 70.8
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 3.2e-07 61.6 40 72.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 2.1e-06 58.9 73 47.9


User provided reference genes

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