Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007175 Lotus japonicus HOM05D000725 ORTHO05D002005 0.0e+00 1328.5 755 100.0
Lj1g0025431 Lotus japonicus HOM05D000725 ORTHO05D002005 2.0e-181 640.2 665 57.3
Glyma.12G006900 Glycine max HOM05D000725 ORTHO05D002005 2.4e-25 121.7 289 34.6
Glyma.08G339800 Glycine max HOM05D000725 ORTHO05D002005 7.7e-24 116.7 176 40.3
Phvul.008G139700 Phaseolus vulgaris HOM05D000725 ORTHO05D002005 1.9e-22 112.1 236 33.5
Lalb_Chr03g0040861 Lupinus albus HOM05D000725 ORTHO05D002005 4.7e-21 107.5 387 30.7
Glyma.08G339900 Glycine max HOM05D000725 ORTHO05D002005 2.3e-20 105.1 153 40.5
Psat3g159320 Pisum sativum HOM05D000725 ORTHO05D002005 8.9e-20 103.2 186 37.1
TPR.G39061 Trifolium pratense HOM05D000725 ORTHO05D002005 2.0e-19 102.1 187 39.0
Medtr7g450790 Medicago truncatula HOM05D000725 ORTHO05D002005 1.1e-17 96.3 139 38.1
Medtr7g050445 Medicago truncatula HOM05D000725 ORTHO05D002005 1.4e-17 95.9 135 43.7
Medtr7g450820 Medicago truncatula HOM05D000725 ORTHO05D002005 1.4e-17 95.9 188 36.2
Psat3g156360 Pisum sativum HOM05D000725 ORTHO05D002005 1.4e-17 95.9 184 35.9
Medtr7g450780 Medicago truncatula HOM05D000725 ORTHO05D002005 7.0e-17 93.6 139 37.4
Medtr4g088650 Medicago truncatula HOM05D000725 ORTHO05D002005 9.2e-17 93.2 189 34.4
Phvul.008G139600 Phaseolus vulgaris HOM05D000725 ORTHO05D002005 5.9e-16 90.5 175 36.0
Psat4g169280 Pisum sativum HOM05D000725 ORTHO05D002005 7.8e-16 90.1 138 39.1
Medtr7g029525 Medicago truncatula HOM05D000725 ORTHO05D002005 1.3e-15 89.4 135 39.3
QL04p026517 Quercus lobata HOM05D000725 ORTHO05D002005 2.9e-15 88.2 146 37.0
Ca_20450_v3 Cicer arietinum L. HOM05D000725 ORTHO05D002005 5.6e-14 84.0 101 41.6
VMungo1383G0423 Vigna mungo HOM05D000725 ORTHO05D002005 2.3e-12 78.6 189 34.4
arahy.Tifrunner.gnm1.ann1.97JS8R Arachis hypogaea HOM05D000725 ORTHO05D002005 5.2e-12 77.4 192 33.3
TPR.G10179 Trifolium pratense HOM05D000725 ORTHO05D002005 1.2e-11 76.3 190 32.6
arahy.Tifrunner.gnm1.ann1.3X7AYT Arachis hypogaea HOM05D000725 ORTHO05D002005 2.0e-11 75.5 152 35.5
Medtr7g450860 Medicago truncatula HOM05D000725 ORTHO05D002005 3.4e-11 74.7 273 28.6
TPR.G39051 Trifolium pratense HOM05D000725 ORTHO05D002005 5.8e-11 73.9 185 32.4
arahy.Tifrunner.gnm1.ann1.S8TDAG Arachis hypogaea HOM05D000725 ORTHO05D002005 9.8e-11 73.2 191 30.9
arahy.Tifrunner.gnm1.ann1.UYCW98 Arachis hypogaea HOM05D000725 ORTHO05D002005 9.8e-11 73.2 191 30.9
QL05p067774 Quercus lobata HOM05D000725 ORTHO05D002005 2.2e-10 72.0 139 36.7
Sp3g22150 Schrenkiella parvula HOM05D000725 ORTHO05D002005 3.7e-10 71.2 153 32.7
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 1.4e-09 69.3 89 39.3
Haze_08343 Corylus avellana HOM05D000725 ORTHO05D002005 4.1e-09 67.8 129 34.1
TPR.G39091 Trifolium pratense HOM05D000725 ORTHO05D002005 4.1e-09 67.8 152 32.9
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 5.4e-09 67.4 85 44.7
Aqoxy4G01578 Aquilegia oxysepala HOM05D000725 ORTHO05D002005 9.2e-09 66.6 128 35.2
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 1.2e-08 66.2 111 37.8
Cfa012353 Carpinus fangiana HOM05D000725 ORTHO05D002005 2.7e-08 65.1 129 33.3
TWI79G1274 Tripterygium wilfordii HOM05D000725 ORTHO05D002005 3.5e-08 64.7 191 29.8
arahy.Tifrunner.gnm1.ann1.9JBJ7A Arachis hypogaea HOM05D000725 ORTHO05D002005 4.6e-08 64.3 184 31.5
BcaC01g03323 Brassica carinata HOM05D000725 ORTHO05D002005 4.6e-08 64.3 123 39.0
C03p53660 Brassica napus HOM05D000725 ORTHO05D002005 4.6e-08 64.3 123 39.0
BolC3t17626H Brassica oleracea HOM05D000725 ORTHO05D002005 4.6e-08 64.3 123 39.0
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 4.6e-08 64.3 92 35.9
Nn1g00714 Nelumbo nucifera HOM05D000725 ORTHO05D002005 7.8e-08 63.5 93 37.6
A03p43610 Brassica napus HOM05D000725 ORTHO05D002005 1.3e-07 62.8 89 41.6
BraA03t13498Z Brassica rapa HOM05D000725 ORTHO05D002005 1.3e-07 62.8 89 41.6
TAR636G0971 Trochodendron aralioides HOM05D000725 ORTHO05D002005 1.3e-07 62.8 115 34.8
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 1.7e-07 62.4 94 41.5
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 2.3e-07 62.0 126 33.3
Potri.010G183799 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.3e-07 62.0 90 36.7
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 2.3e-07 62.0 109 36.7
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 2.3e-07 62.0 109 36.7
TPR.G39034 Trifolium pratense HOM05D000725 ORTHO05D002005 2.3e-07 62.0 183 25.7
Atru.chr9.1152 Acer truncatum HOM05D000725 ORTHO05D002005 3.0e-07 61.6 98 38.8
CiPaw.12G056600 Carya illinoinensis HOM05D000725 ORTHO05D002005 3.0e-07 61.6 108 34.3
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 3.0e-07 61.6 114 36.8
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 3.0e-07 61.6 94 39.4
Aqoxy2G03948 Aquilegia oxysepala HOM05D000725 ORTHO05D002005 3.9e-07 61.2 148 32.4
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 3.9e-07 61.2 87 39.1
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 3.9e-07 61.2 87 41.4
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 5.0e-07 60.8 87 36.8
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 5.0e-07 60.8 178 27.5
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 6.6e-07 60.5 95 35.8
BcaB03g14589 Brassica carinata HOM05D000725 ORTHO05D002005 6.6e-07 60.5 80 42.5
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 6.6e-07 60.5 95 41.1
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 6.6e-07 60.5 94 37.2
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 8.6e-07 60.1 109 38.5
Aa31LG8G11070 Aethionema arabicum HOM05D000725 ORTHO05D002005 8.6e-07 60.1 91 39.6
Dinv44034 Davidia involucrata HOM05D002442 ORTHO05D002670 8.6e-07 60.1 185 30.8
Thhalv10002375m.g Eutrema salsugineum HOM05D000725 ORTHO05D002005 8.6e-07 60.1 105 36.2
THA.LOC104808746 Tarenaya hassleriana HOM05D000725 ORTHO05D002005 8.6e-07 60.1 159 31.4
AL3G39800 Arabidopsis lyrata HOM05D000725 ORTHO05D002005 1.1e-06 59.7 94 37.2
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 1.1e-06 59.7 81 37.0
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 1.1e-06 59.7 109 35.8
Aqoxy3G00805 Aquilegia oxysepala HOM05D000725 ORTHO05D002005 1.5e-06 59.3 97 34.0
Carub.0003s2468 Capsella rubella HOM05D000725 ORTHO05D002005 1.5e-06 59.3 94 38.3
TAR629G1397 Trochodendron aralioides HOM05D000725 ORTHO05D002005 1.5e-06 59.3 182 29.1
BcaB06g26619 Brassica carinata HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
BcaC06g35688 Brassica carinata HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
A07p07970 Brassica napus HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
C07p12020 Brassica napus HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
BolC7t41670H Brassica oleracea HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
BraA07t28584Z Brassica rapa HOM05D000725 ORTHO05D002005 1.9e-06 58.9 80 40.0
Eucgr.E00332 Eucalyptus grandis HOM05D000725 ORTHO05D002005 1.9e-06 58.9 97 38.1
Potri.014G050200 Populus trichocarpa HOM05D000725 ORTHO05D002005 1.9e-06 58.9 168 29.8
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 2.5e-06 58.5 75 44.0
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 2.5e-06 58.5 114 39.5
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 2.5e-06 58.5 110 34.5
Lj9A551T46 Lonicera japonica HOM05D000725 ORTHO05D002005 2.5e-06 58.5 114 36.8
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 2.5e-06 58.5 112 34.8
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 2.5e-06 58.5 119 31.9
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 3.3e-06 58.2 68 42.6
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 3.3e-06 58.2 87 35.6
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 3.3e-06 58.2 87 35.6
CsaV3_3G049740 Cucumis sativus L. HOM05D000725 ORTHO05D002005 3.3e-06 58.2 114 34.2
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 3.3e-06 58.2 68 42.6
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 3.3e-06 58.2 106 32.1
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 4.3e-06 57.8 90 34.4
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 4.3e-06 57.8 80 35.0
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 4.3e-06 57.8 77 37.7
Thecc.08G178700 Theobroma cacao HOM05D000725 ORTHO05D002005 4.3e-06 57.8 168 28.0
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 5.6e-06 57.4 84 38.1
AT3G24340 Arabidopsis thaliana HOM05D000725 ORTHO05D002005 5.6e-06 57.4 94 36.2
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 5.6e-06 57.4 84 38.1
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.6e-06 57.4 106 31.1
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.6e-06 57.4 106 31.1
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 5.6e-06 57.4 107 33.6
Duzib177G0991 Durio zibethinus HOM05D000725 ORTHO05D002005 5.6e-06 57.4 168 28.6
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 5.6e-06 57.4 86 32.6
MD04G1053800 Malus domestica HOM05D000725 ORTHO05D002005 5.6e-06 57.4 153 30.1
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 7.3e-06 57.0 87 35.6
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 7.3e-06 57.0 87 35.6
ClCG09G012590 Citrullus lanatus HOM05D000725 ORTHO05D002005 7.3e-06 57.0 184 28.8
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 7.3e-06 57.0 85 37.6
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 7.3e-06 57.0 81 33.3
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 9.5e-06 56.6 102 36.3
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 9.5e-06 56.6 102 36.3
SHI07608 Sapria himalayana HOM05D000725 ORTHO05D002005 9.5e-06 56.6 104 33.7
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 9.5e-06 56.6 109 33.9


User provided reference genes

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