Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 2.7e-247 858.2 428 100.0
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 4.9e-193 677.9 426 81.5
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 7.9e-191 670.6 424 81.1
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.1e-189 666.8 423 80.6
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 6.9e-187 657.5 426 79.8
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.5e-186 656.4 428 79.4
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 3.4e-186 655.2 423 78.7
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.0e-185 653.7 431 79.1
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.0e-185 653.7 428 79.0
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 4.2e-184 648.3 423 77.8
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 4.6e-183 644.8 440 76.8
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.9e-174 615.1 427 76.1
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.7e-167 592.4 403 76.7
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.1e-155 553.9 432 68.8
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 5.3e-155 551.6 430 68.1
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.1e-152 543.9 432 66.0
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 6.1e-151 538.1 429 67.1
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 6.1e-151 538.1 430 66.7
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 8.8e-150 534.3 430 66.7
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 7.5e-149 531.2 435 65.3
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.3e-148 530.4 430 64.7
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.3e-148 530.4 436 65.6
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 2.2e-148 529.6 434 64.5
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.2e-148 529.6 437 64.8
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.8e-147 526.6 437 64.3
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.8e-147 526.6 435 65.1
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.4e-147 526.2 430 63.7
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.1e-147 525.8 430 63.5
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.2e-146 523.9 437 64.1
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.2e-146 523.9 433 64.4
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 3.5e-146 522.3 439 64.0
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 2.2e-145 519.6 438 63.9
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.9e-144 516.5 471 60.7
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.9e-144 516.5 437 63.6
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 4.2e-144 515.4 430 63.0
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 9.4e-144 514.2 435 63.4
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.2e-143 513.8 435 62.5
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.1e-143 513.1 431 63.8
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.7e-143 512.7 431 61.5
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 6.1e-143 511.5 438 62.6
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.8e-142 510.0 431 62.4
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.8e-142 510.0 435 62.8
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 2.3e-142 509.6 510 56.7
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 8.8e-142 507.7 434 63.8
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 2.8e-140 502.7 431 61.9
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 6.3e-140 501.5 435 59.3
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 2.7e-138 496.1 432 61.3
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.3e-137 493.0 433 61.9
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 3.3e-136 489.2 424 60.1
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 7.2e-136 488.0 418 61.2
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 7.2e-136 488.0 432 63.2
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 1.6e-135 486.9 433 58.9
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 2.8e-135 486.1 435 61.4
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 8.0e-135 484.6 434 61.5
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 1.0e-134 484.2 433 61.2
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 2.3e-134 483.0 471 56.9
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 3.0e-134 482.6 432 58.8
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 4.0e-134 482.3 425 60.7
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 8.9e-134 481.1 432 59.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 8.9e-134 481.1 425 60.2
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 2.6e-133 479.6 457 57.3
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 3.4e-133 479.2 445 58.0
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 4.4e-133 478.8 421 60.1
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 9.8e-133 477.6 424 59.0
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 2.8e-132 476.1 428 58.9
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 3.7e-132 475.7 440 57.7
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 3.7e-132 475.7 424 59.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 8.3e-132 474.6 453 57.0
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.1e-131 474.2 426 60.1
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 2.4e-131 473.0 426 60.1
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 9.2e-131 471.1 428 58.6
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.7e-130 469.5 428 58.6
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.0e-129 467.6 434 58.8
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.7e-129 466.8 425 59.5
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.5e-128 463.8 427 58.3
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 5.6e-128 461.8 427 58.5
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 7.3e-128 461.5 439 57.6
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 2.8e-127 459.5 431 58.2
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 2.8e-127 459.5 436 57.3
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 3.1e-126 456.1 428 57.2
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.5e-125 453.8 421 58.2
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.5e-125 453.8 437 56.8
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 2.6e-125 453.0 430 56.7
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 5.8e-125 451.8 456 55.0
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.9e-123 446.8 444 55.2
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.6e-122 443.7 430 55.6
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 2.7e-122 443.0 421 57.0
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 4.6e-122 442.2 446 54.5
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 7.3e-120 434.9 437 53.5
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 2.6e-117 426.4 412 56.6
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 9.8e-117 424.5 331 67.1
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.1e-115 421.0 432 55.3
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 1.4e-115 420.6 399 56.1
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.5e-112 410.6 427 53.2
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 6.6e-105 385.2 305 66.6
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.2e-100 370.2 343 58.6
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 5.4e-99 365.5 297 65.3
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 4.6e-98 362.5 425 48.2
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.5e-93 347.4 408 49.0
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.6e-93 346.7 256 69.5
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 7.6e-93 345.1 432 47.2
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-92 344.4 432 49.1
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.9e-91 340.5 436 46.6
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 5.3e-86 322.4 243 69.5
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 9.3e-83 311.6 439 46.2
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 1.1e-78 298.1 379 46.4
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 4.0e-78 296.2 379 45.9
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 4.5e-77 292.7 434 40.3
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 4.2e-75 286.2 377 45.1
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 7.9e-74 282.0 372 46.5
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 1.5e-72 277.7 442 38.0
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 9.6e-72 275.0 461 39.7
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 8.2e-71 271.9 202 67.3
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 2.6e-69 266.9 388 42.3
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 2.3e-65 253.8 289 51.2
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 4.5e-61 239.6 406 39.7
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.6e-53 213.8 168 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 3.2e-51 206.8 331 39.6
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 1.8e-49 201.1 234 50.0
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.0e-49 200.3 167 61.1
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 6.7e-49 199.1 422 34.4
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 5.7e-48 196.1 458 35.6
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 2.9e-44 183.7 327 41.9
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 5.2e-41 172.9 281 42.0
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 5.5e-35 152.9 234 41.5
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.0e-33 147.1 307 38.4
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 6.8e-33 146.0 125 56.0
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.1e-30 138.7 349 26.1
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 6.5e-28 129.4 98 70.4
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 3.2e-27 127.1 212 42.5
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 3.2e-27 127.1 109 63.3
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 9.4e-27 125.6 420 28.1
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.4e-25 121.7 98 66.3
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 6.8e-25 119.4 210 39.5
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 8.8e-25 119.0 209 39.7
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 8.8e-25 119.0 128 53.1
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 8.8e-25 119.0 128 53.1
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 2.3e-20 104.4 158 47.5
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 5.0e-20 103.2 87 67.8
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 5.0e-20 103.2 124 47.6
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 8.6e-20 102.4 77 62.3
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.5e-19 101.7 77 62.3
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 2.0e-16 91.3 268 28.0
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.0e-12 79.0 174 34.5
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 5.0e-12 76.6 86 52.3
Aqoxy3G03107 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 6.6e-12 76.3 185 32.4
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 1.9e-11 74.7 178 32.0
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 4.3e-11 73.6 77 53.2
Cfa009094 Carpinus fangiana HOM05D000453 ORTHO05D000387 9.5e-11 72.4 184 30.4
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 1.6e-10 71.6 185 29.2
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 1.6e-10 71.6 185 29.2
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 2.8e-10 70.9 77 51.9
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 2.8e-10 70.9 183 27.9
AUR62039424 Chenopodium quinoa HOM05D000453 ORTHO05D000387 6.2e-10 69.7 185 27.6
Thhalv10007766m.g Eutrema salsugineum HOM05D000453 ORTHO05D000387 6.2e-10 69.7 201 26.4
Lsat_1_v5_gn_3_49560 Lactuca sativa HOM05D000453 ORTHO05D000387 2.3e-09 67.8 234 26.9
Lj4g0006234 Lotus japonicus HOM05D000453 ORTHO05D000387 2.3e-09 67.8 174 30.5
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 3.1e-09 67.4 124 36.3
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 5.2e-09 66.6 99 47.5
Sc04g0008840 Simmondsia chinensis HOM05D000453 ORTHO05D000387 5.2e-09 66.6 175 28.6
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 1.5e-08 65.1 186 27.4
Glyma.06G185900 Glycine max HOM05D000453 ORTHO05D000387 2.0e-08 64.7 174 27.6
Lalb_Chr16g0382521 Lupinus albus HOM05D000453 ORTHO05D000387 2.6e-08 64.3 179 26.8
HanXRQChr15g0476101 Helianthus annuus HOM05D000453 ORTHO05D000387 4.4e-08 63.5 178 28.1
Haze_26340 Corylus avellana HOM05D003006 ORTHO05D003438 5.8e-08 63.2 182 29.7
Lalb_Chr12g0201371 Lupinus albus HOM05D000453 ORTHO05D000387 5.8e-08 63.2 174 28.2
Hund27181 Selenicereus undatus HOM05D000645 ORTHO05D000494 1.7e-07 61.6 204 26.0
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 2.2e-07 61.2 241 26.1
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 2.2e-07 61.2 63 55.6
Migut.I00057 Erythranthe guttata HOM05D000453 ORTHO05D000387 2.9e-07 60.8 147 29.3
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 2.9e-07 60.8 50 60.0
Pp3c21_8000 Physcomitrium patens HOM05D000992 ORTHO05D001928 8.3e-07 59.3 148 29.1
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 1.1e-06 58.9 181 29.3
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.4e-06 58.5 110 33.6
Mapoly0022s0099 Marchantia polymorpha HOM05D002999 ORTHO05D003137 1.4e-06 58.5 275 26.2
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.4e-06 58.5 182 29.1
CsaV3_4G024950 Cucumis sativus L. HOM05D000645 ORTHO05D000494 4.1e-06 57.0 247 23.5
BcaC01g06293 Brassica carinata HOM05D000645 ORTHO05D000494 5.4e-06 56.6 320 22.5
BolC3t14139H Brassica oleracea HOM05D000645 ORTHO05D000494 5.4e-06 56.6 320 22.5
ClCG04G008220 Citrullus lanatus HOM05D000645 ORTHO05D000494 5.4e-06 56.6 278 23.7
MELO3C003126.2 Cucumis melo HOM05D000645 ORTHO05D000494 7.0e-06 56.2 247 23.5


User provided reference genes

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