Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006363 Lotus japonicus HOM05D003882 ORTHO05D004598 2.7e-79 298.5 142 100.0
Lj1g0011810 Lotus japonicus HOM05D003882 ORTHO05D004598 3.7e-28 128.6 67 91.0
Lj1g0002107 Lotus japonicus HOM05D003882 ORTHO05D004598 1.1e-27 127.1 118 57.6
LjContig00155g0003661 Lotus japonicus HOM05D003882 ORTHO05D004598 1.4e-27 126.7 91 69.2
Lj1g0003723 Lotus japonicus HOM05D003882 ORTHO05D004598 1.3e-20 103.6 61 78.7
TPR.G39975 Trifolium pratense HOM05D003882 ORTHO05D004598 6.3e-20 101.3 112 50.9
Medtr1g016110 Medicago truncatula HOM05D003882 ORTHO05D004598 1.8e-19 99.8 61 75.4
Medtr1g019620 Medicago truncatula HOM05D003882 ORTHO05D004598 1.8e-19 99.8 61 75.4
Ca_13161_v3 Cicer arietinum L. HOM05D003882 ORTHO05D004598 2.4e-19 99.4 61 75.4
TPR.G13098 Trifolium pratense HOM05D003882 ORTHO05D004598 4.1e-19 98.6 62 72.6
Lalb_Chr05g0220891 Lupinus albus HOM05D003882 ORTHO05D004598 1.6e-18 96.7 61 73.8
Psat6g020160 Pisum sativum HOM05D003882 ORTHO05D004598 2.7e-18 95.9 61 73.8
Atru.chr6.2490 Acer truncatum HOM05D003882 ORTHO05D004598 7.7e-18 94.4 61 72.1
arahy.Tifrunner.gnm1.ann1.2L480B Arachis hypogaea HOM05D003882 ORTHO05D004598 7.7e-18 94.4 60 71.7
Lalb_Chr16g0386401 Lupinus albus HOM05D003882 ORTHO05D004598 1.0e-17 94.0 61 73.8
AUR62014165 Chenopodium quinoa HOM05D003882 ORTHO05D004598 1.3e-17 93.6 129 39.5
AUR62014166 Chenopodium quinoa HOM05D003882 ORTHO05D004598 1.3e-17 93.6 129 39.5
arahy.Tifrunner.gnm1.ann1.61M3XX Arachis hypogaea HOM05D003882 ORTHO05D004598 1.7e-17 93.2 60 70.0
Phvul.001G035900 Phaseolus vulgaris HOM05D003882 ORTHO05D004598 5.0e-17 91.7 61 68.9
PGR142G3649 Punica granatum HOM05D003882 ORTHO05D004598 6.5e-17 91.3 60 68.3
SHI03873 Sapria himalayana HOM05D003882 ORTHO05D004598 8.6e-17 90.9 132 40.2
EL10Ac7g16174 Beta vulgaris HOM05D003882 ORTHO05D004598 1.1e-16 90.5 66 63.6
AUR62002701 Chenopodium quinoa HOM05D003882 ORTHO05D004598 1.1e-16 90.5 59 67.8
Actinidia06312 Actinidia chinensis HOM05D003882 ORTHO05D004598 1.5e-16 90.1 59 69.5
CSS0000820 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 1.5e-16 90.1 59 69.5
CSS0015034 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 1.5e-16 90.1 59 69.5
VMungo0647G1296 Vigna mungo HOM05D003882 ORTHO05D004598 1.5e-16 90.1 60 70.0
CSS0002062 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D003383 1.9e-16 89.7 59 69.5
Eucgr.D01084 Eucalyptus grandis HOM05D003882 ORTHO05D004598 1.9e-16 89.7 60 66.7
Os04g0485400 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 1.9e-16 89.7 61 67.2
Prupe.3G300400 Prunus persica HOM05D003882 ORTHO05D004598 1.9e-16 89.7 60 68.3
TWI18G0330 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 1.9e-16 89.7 59 67.8
Actinidia36170 Actinidia chinensis HOM05D003882 ORTHO05D004598 3.3e-16 89.0 59 67.8
ATR0782G139 Amborella trichopoda HOM05D003882 ORTHO05D004598 3.3e-16 89.0 59 66.1
MELO3C008983.2 Cucumis melo HOM05D003882 ORTHO05D004598 3.3e-16 89.0 60 66.7
CsaV3_4G031060 Cucumis sativus L. HOM05D003882 ORTHO05D004598 3.3e-16 89.0 60 66.7
Prupe.1G532900 Prunus persica HOM05D003882 ORTHO05D004598 3.3e-16 89.0 60 68.3
MSTRG.24071 Avicennia marina HOM05D003882 ORTHO05D004598 4.2e-16 88.6 63 63.5
QL02p072792 Quercus lobata HOM05D003882 ORTHO05D004598 4.2e-16 88.6 60 68.3
Zm00001eb183970 Zea mays HOM05D003882 ORTHO05D004598 4.2e-16 88.6 61 65.6
Os02g0601100 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 5.5e-16 88.2 60 68.3
MSTRG.3108 Avicennia marina HOM05D003882 ORTHO05D004598 7.2e-16 87.8 98 44.9
ClCG04G001410 Citrullus lanatus HOM05D003882 ORTHO05D004598 7.2e-16 87.8 60 65.0
Glyma.14G095000 Glycine max HOM05D003882 ORTHO05D004598 7.2e-16 87.8 61 67.2
Sed0009517 Sechium edule HOM05D003882 ORTHO05D004598 7.2e-16 87.8 61 65.6
Hund27387 Selenicereus undatus HOM05D003882 ORTHO05D004598 7.2e-16 87.8 139 41.0
COL.COLO4_15327 Corchorus olitorius HOM05D003882 ORTHO05D004598 9.5e-16 87.4 59 67.8
Thecc.04G028000 Theobroma cacao HOM05D003882 ORTHO05D004598 9.5e-16 87.4 59 67.8
Zm00001eb246360 Zea mays HOM05D003882 ORTHO05D004598 9.5e-16 87.4 60 66.7
DCAR_005600 Daucus carota HOM05D003882 ORTHO05D004598 1.2e-15 87.0 61 67.2
DCAR_015078 Daucus carota HOM05D003882 ORTHO05D004598 1.2e-15 87.0 61 67.2
Duzib264G0449 Durio zibethinus HOM05D003882 ORTHO05D004598 1.2e-15 87.0 59 67.8
PSO675G6248 Papaver somniferum HOM05D003882 ORTHO05D004598 1.2e-15 87.0 60 66.7
QL09p018923 Quercus lobata HOM05D003882 ORTHO05D004598 1.2e-15 87.0 84 53.6
TAR629G1857 Trochodendron aralioides HOM05D003882 ORTHO05D004598 1.2e-15 87.0 60 63.3
Cc00_g01950 Coffea canephora HOM05D003882 ORTHO05D004598 1.6e-15 86.7 59 69.5
PSO017G7334 Papaver somniferum HOM05D003882 ORTHO05D004598 1.6e-15 86.7 60 66.7
SalBow8G1058 Salvia bowleyana HOM05D003882 ORTHO05D004598 1.6e-15 86.7 63 61.9
Thecc.05G285600 Theobroma cacao HOM05D003882 ORTHO05D004598 1.6e-15 86.7 59 67.8
GSVIVG01001845001 Vitis vinifera HOM05D003882 ORTHO05D004598 1.6e-15 86.7 59 67.8
Cpa.g.sc130.36 Carica papaya HOM05D003882 ORTHO05D004598 2.1e-15 86.3 59 67.8
Duzib177G1128 Durio zibethinus HOM05D003882 ORTHO05D004598 2.1e-15 86.3 59 67.8
Migut.H00063 Erythranthe guttata HOM05D003882 ORTHO05D004598 2.1e-15 86.3 63 63.5
Gohir.A09G033520 Gossypium hirsutum HOM05D003882 ORTHO05D004598 2.1e-15 86.3 59 66.1
Gorai.006G038800 Gossypium raimondii HOM05D003882 ORTHO05D004598 2.1e-15 86.3 59 66.1
MD17G1017500 Malus domestica HOM05D003882 ORTHO05D004598 2.1e-15 86.3 60 66.7
Peaxi162Scf00169g00820 Petunia axillaris HOM05D003882 ORTHO05D004598 2.1e-15 86.3 59 67.8
TWI36G1591 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 2.1e-15 86.3 60 61.7
Cc00_g03690 Coffea canephora HOM05D003882 ORTHO05D004598 2.8e-15 85.9 59 69.5
Duzib106G0341 Durio zibethinus HOM05D003882 ORTHO05D004598 2.8e-15 85.9 59 67.8
TAR371G0752 Trochodendron aralioides HOM05D003882 ORTHO05D004598 2.8e-15 85.9 60 66.7
CDE02G2967 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 65.0
CDE09G0216 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 65.0
Haze_14818 Corylus avellana HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 68.3
FvH4_6g52730 Fragaria vesca HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 68.3
FAN14G5526 Fragaria x ananassa HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 68.3
QL04p003729 Quercus lobata HOM05D003882 ORTHO05D004598 3.6e-15 85.5 60 66.7
QL06p031218 Quercus lobata HOM05D003882 ORTHO05D004598 3.6e-15 85.5 63 63.5
Sed0012212 Sechium edule HOM05D003882 ORTHO05D004598 3.6e-15 85.5 61 63.9
THA.LOC104820947 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 3.6e-15 85.5 64 59.4
CiPaw.03G050800 Carya illinoinensis HOM05D003882 ORTHO05D004598 4.7e-15 85.1 60 68.3
Dinv41146 Davidia involucrata HOM05D003882 ORTHO05D004598 4.7e-15 85.1 62 62.9
Oeu058762.1 Olea europaea HOM05D003882 ORTHO05D004598 4.7e-15 85.1 59 64.4
Sc14g0001460 Simmondsia chinensis HOM05D003882 ORTHO05D004598 4.7e-15 85.1 62 66.1
THA.LOC104802387 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 4.7e-15 85.1 64 59.4
CAN.G566.35 Capsicum annuum HOM05D003882 ORTHO05D004598 6.1e-15 84.7 59 66.1
Gohir.D09G033800 Gossypium hirsutum HOM05D003882 ORTHO05D004598 6.1e-15 84.7 59 66.1
Manes.15G156600 Manihot esculenta HOM05D003882 ORTHO05D004598 6.1e-15 84.7 59 66.1
Nitab4.5_0001961g0110 Nicotiana tabacum HOM05D003882 ORTHO05D004598 6.1e-15 84.7 59 66.1
Nitab4.5_0005160g0070 Nicotiana tabacum HOM05D003882 ORTHO05D004598 6.1e-15 84.7 59 66.1
AL8G25150 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 8.0e-15 84.3 59 61.0
Cfa007272 Carpinus fangiana HOM05D003882 ORTHO05D004598 8.0e-15 84.3 60 66.7
FAN09G0633 Fragaria x ananassa HOM05D003882 ORTHO05D004598 8.0e-15 84.3 60 68.3
HanXRQChr11g0321651 Helianthus annuus HOM05D003882 ORTHO05D004598 8.0e-15 84.3 125 39.2
Peaxi162Scf00046g02622 Petunia axillaris HOM05D003882 ORTHO05D004598 8.0e-15 84.3 59 66.1
Potri.001G336900 Populus trichocarpa HOM05D003882 ORTHO05D004598 8.0e-15 84.3 59 64.4
Sabra16G0217800 Salix brachista HOM05D003882 ORTHO05D004598 8.0e-15 84.3 59 64.4
AL2G37760 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 1.0e-14 84.0 63 57.1
CANSAT64G0400 Cannabis sativa HOM05D003882 ORTHO05D004598 1.4e-14 83.6 60 66.7
Ciclev10015755m.g Citrus clementina HOM05D003882 ORTHO05D004598 1.4e-14 83.6 59 66.1
CARHR257250 Cardamine hirsuta HOM05D003882 ORTHO05D004598 1.8e-14 83.2 58 62.1
CiPaw.04G033400 Carya illinoinensis HOM05D003882 ORTHO05D004598 1.8e-14 83.2 60 66.7
Thhalv10021039m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 1.8e-14 83.2 59 59.3
Glyma.17G228500 Glycine max HOM05D003882 ORTHO05D004598 1.8e-14 83.2 61 63.9
AT5G50960 Arabidopsis thaliana HOM05D003882 ORTHO05D004598 2.3e-14 82.8 59 59.3
Carub.0008s1098 Capsella rubella HOM05D003882 ORTHO05D004598 2.3e-14 82.8 59 61.0
Solyc12g096690.2 Solanum lycopersicum HOM05D003882 ORTHO05D004598 2.3e-14 82.8 59 66.1
Sopen12g032520 Solanum pennellii HOM05D003882 ORTHO05D004598 2.3e-14 82.8 59 66.1
Aa31LG11G15090 Aethionema arabicum HOM05D003882 ORTHO05D004598 3.0e-14 82.4 55 65.5
Lju41A47T20 Lonicera japonica HOM05D003882 ORTHO05D004598 3.0e-14 82.4 57 66.7
PSO541G0693 Papaver somniferum HOM05D003882 ORTHO05D004598 4.0e-14 82.0 60 61.7
HanXRQChr05g0147771 Helianthus annuus HOM05D003882 ORTHO05D004598 5.2e-14 81.6 60 63.3
MD09G1017000 Malus domestica HOM05D003882 ORTHO05D004598 5.2e-14 81.6 60 63.3
HPP92_019923 Vanilla planifolia HOM05D003882 ORTHO05D004598 5.2e-14 81.6 62 62.9
Hma1.2p1_0227F.1_g095890 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 6.8e-14 81.3 61 63.9
MBI17_g07068_MAGBIO Magnolia biondii HOM05D003882 ORTHO05D004598 6.8e-14 81.3 64 59.4
HanXRQChr15g0470031 Helianthus annuus HOM05D003882 ORTHO05D004598 8.9e-14 80.9 60 63.3
Pp3c11_10240 Physcomitrium patens HOM05D003882 ORTHO05D004598 8.9e-14 80.9 59 57.6
PGSC0003DMG401029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 8.9e-14 80.9 60 65.0
Sp3g17870 Schrenkiella parvula HOM05D003882 ORTHO05D004598 1.2e-13 80.5 62 56.5
BcaC05g24912 Brassica carinata HOM05D003882 ORTHO05D004598 1.5e-13 80.1 62 56.5
Lsat_1_v5_gn_0_8180 Lactuca sativa HOM05D003882 ORTHO05D004598 2.0e-13 79.7 60 61.7
unitig_899.g15454 Utricularia gibba HOM05D003882 ORTHO05D004598 2.0e-13 79.7 62 58.1
RcHm_v2.0_Chr2g0174341 Rosa chinensis HOM05D003882 ORTHO05D004598 2.6e-13 79.3 60 63.3
PGSC0003DMG402029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 2.6e-13 79.3 60 63.3
BcaC06g30598 Brassica carinata HOM05D003882 ORTHO05D004598 4.4e-13 78.6 63 52.4
FAN05G0109 Fragaria x ananassa HOM05D003882 ORTHO05D004598 4.4e-13 78.6 60 65.0
A01p34890 Brassica napus HOM05D003882 ORTHO05D004598 9.8e-13 77.4 64 56.2
C01p44280 Brassica napus HOM05D003882 ORTHO05D004598 9.8e-13 77.4 64 56.2
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 9.8e-13 77.4 64 56.2
Nitab4.5_0000668g0140 Nicotiana tabacum HOM05D003882 ORTHO05D004598 9.8e-13 77.4 59 59.3
BcaC05g28398 Brassica carinata HOM05D003882 ORTHO05D004598 1.3e-12 77.0 63 55.6
A05p29270 Brassica napus HOM05D003882 ORTHO05D004598 1.3e-12 77.0 63 55.6
C05p44780 Brassica napus HOM05D003882 ORTHO05D004598 1.3e-12 77.0 63 55.6
BolC5t33204H Brassica oleracea HOM05D003882 ORTHO05D004598 1.3e-12 77.0 63 55.6
BraA05t21810Z Brassica rapa HOM05D003882 ORTHO05D004598 1.3e-12 77.0 63 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3627 Anthoceros agrestis HOM05D003882 ORTHO05D004598 1.7e-12 76.6 62 58.1
DCAR_011293 Daucus carota HOM05D003882 ORTHO05D004598 1.7e-12 76.6 61 59.0
BraA03t14240Z Brassica rapa HOM05D003882 ORTHO05D004598 2.8e-12 75.9 63 54.0
Thhalv10024147m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 2.8e-12 75.9 66 51.5
SEGI_31184 Sequoiadendron giganteum HOM05D003882 ORTHO05D004598 2.8e-12 75.9 62 59.7
Aqoxy6G00237 Aquilegia oxysepala HOM05D003882 ORTHO05D004598 3.7e-12 75.5 59 59.3
BcaNung02678 Brassica carinata HOM05D003882 ORTHO05D004598 3.7e-12 75.5 63 54.0
C07p50020 Brassica napus HOM05D003882 ORTHO05D000252 3.7e-12 75.5 63 54.0
BolC7t45504H Brassica oleracea HOM05D003882 ORTHO05D000252 3.7e-12 75.5 63 54.0
Mapoly0071s0001 Marchantia polymorpha HOM05D003882 ORTHO05D004598 3.7e-12 75.5 61 59.0
HanXRQChr05g0147751 Helianthus annuus HOM05D003882 ORTHO05D004598 2.4e-11 72.8 60 53.3
CARHR257230 Cardamine hirsuta HOM05D003882 ORTHO05D004598 1.6e-10 70.1 59 54.2
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 1.3e-09 67.0 54 55.6
Nitab4.5_0000136g0010 Nicotiana tabacum HOM05D003882 ORTHO05D004598 1.3e-09 67.0 41 70.7
ECA232G3599 Erigeron canadensis HOM05D003882 ORTHO05D004598 1.1e-08 63.9 56 57.1
SMO301G0043 Selaginella moellendorffii HOM05D003882 ORTHO05D004598 1.9e-08 63.2 58 50.0
CBR_g50436 Chara braunii HOM05D003882 ORTHO05D004598 2.1e-07 59.7 57 49.1


User provided reference genes

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